Item | Value |
---|---|
gene id | LOC110509409 |
gene name | LOC106593257 |
gene type | misc |
species | rainbow trout (Oncorhynchus mykiss) |
category of species | economic fish |
Item | Value |
---|---|
chromosome id | NC_048585.1 |
NCBI id | CM023239.2 |
chromosome length | 64935962 |
location | 64590607 ~ 64647805 (-) |
genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
description |
---|
PREDICTED: LOW QUALITY PROTEIN: F-box only protein 41 |
RNA id | representative | length | rna type | GC content | exon number | start site | end site |
---|---|---|---|---|---|---|---|
XM_036958436.1 | False | 3011 | mRNA | 0.58 | 14 | 64591756 | 64647493 |
XM_036958435.1 | False | 3175 | mRNA | 0.57 | 13 | 64591756 | 64647740 |
XM_036958437.1 | False | 3100 | mRNA | 0.58 | 14 | 64591756 | 64647804 |
XM_036958438.1 | False | 3018 | mRNA | 0.58 | 13 | 64591756 | 64647805 |
XR_005038737.1 | False | 2872 | mRNA | 0.59 | 12 | 64594629 | 64647744 |
TU2018435 | False | 1884 | lncRNA | 0.41 | 5 | 64590607 | 64597712 |
TU2018436 | False | 2518 | TUCP | 0.48 | 10 | 64590607 | 64626515 |
TU2018440 | False | 1864 | lncRNA | 0.41 | 6 | 64590607 | 64597712 |
TU2018441 | False | 1860 | lncRNA | 0.41 | 6 | 64590607 | 64597712 |
TU2018442 | True | 747 | TUCP | 0.57 | 4 | 64626645 | 64633733 |
gene id | symbol | gene type | direction | distance | location |
---|---|---|---|---|---|
LOC118942817 | LOC106608410 | coding | downstream | 58386 | 64525897 ~ 64533370 (-) |
cnga1b | cnga1 | coding | downstream | 73718 | 64483522 ~ 64518038 (-) |
nfxl1 | nfxl1 | coding | downstream | 110769 | 64384916 ~ 64480987 (-) |
LOC118942981 | NA | coding | downstream | 203948 | 64386561 ~ 64387808 (-) |
corin | corin | coding | downstream | 210315 | 64237532 ~ 64381441 (-) |
LOC118942818 | LOC106608414 | coding | upstream | 66017 | 64663711 ~ 64723784 (-) |
LOC118942984 | LOC106592811 | coding | upstream | 128761 | 64776566 ~ 64790358 (-) |
LOC118942819 | LOC106595717 | coding | upstream | 275684 | 64923489 ~ 64930766 (-) |
G1761958 | NA | non-coding | downstream | 10563 | 64580497 ~ 64581193 (-) |
G1761957 | NA | non-coding | downstream | 12348 | 64578157 ~ 64579408 (-) |
G1761944 | NA | non-coding | downstream | 37236 | 64553972 ~ 64554520 (-) |
G1761942 | NA | non-coding | downstream | 38007 | 64547230 ~ 64553749 (-) |
G1761943 | NA | non-coding | downstream | 38764 | 64552227 ~ 64552992 (-) |
G1762051 | NA | non-coding | upstream | 12668 | 64660473 ~ 64662434 (-) |
G1762063 | NA | non-coding | upstream | 31752 | 64679557 ~ 64681616 (-) |
G1762093 | NA | non-coding | upstream | 119725 | 64767530 ~ 64771665 (-) |
G1762091 | NA | non-coding | upstream | 124450 | 64772255 ~ 64772569 (-) |
G1761826 | NA | other | downstream | 173704 | 64417310 ~ 64418052 (-) |
LOC110517683 | LOC106592125 | other | downstream | 368268 | 64205352 ~ 64223639 (-) |
LOC110498011 | LOC106608403 | other | downstream | 759362 | 63823210 ~ 63832447 (-) |
LOC118942979 | NA | other | downstream | 961909 | 63542492 ~ 63629859 (-) |
camta2 | camta2 | other | downstream | 1029703 | 63434675 ~ 63562110 (-) |
G1762080 | NA | other | upstream | 100699 | 64748504 ~ 64749274 (-) |
G1762085 | NA | other | upstream | 105902 | 64753707 ~ 64754499 (-) |
G1762162 | NA | other | upstream | 208703 | 64856508 ~ 64857185 (-) |
G1761963 | NA | non-coding | upstream | 15354 | 64613066 ~ 64613827 (-) |
G1761974 | NA | non-coding | upstream | 37223 | 64634935 ~ 64635371 (-) |
G1761975 | NA | non-coding | upstream | 37960 | 64635672 ~ 64637665 (-) |
G1761976 | NA | non-coding | upstream | 39541 | 64637253 ~ 64637960 (-) |