G1700204


Basic Information

Item Value
gene id G1700204
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 74586 ~ 75368 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1945630
ggaggttgttCTACAGTTATCCCAGTCTCTAACCCATAATAACCCCACATCAGGAGGTTGTTCTACAGTTATCCCAGTCTCTAACCCATAATAACCCCACATCAGGAGGTTGTTCTACAGTTATCCCAGTCTCTAACCCATAATAACCCACATCAGGAGGTTGTTCTACAGTTATCCCAGTCTCTAACCCATAATAACCCCACATCAGGAAGTTGTTCTACAGTTATGCCAGTCTCTAACCCATAATAACCCCACATCAGGAGGTTGTTCTACAGTTATCCCAGTCTCTAACCCATAATAACCCATAGAATCATCACCATGGAAACAGCTTATCATCTGCTCAACCTCTATTATTTATTTGtccatgtatctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatatgtgtatatgtgtttgaGGTCAGCTGTTCCAACAACATGGAAACTCATTCCACCAGTAGGTCTAACTAACGAGCAGTAAGAAACCATGTTTGGTCCAACACAAACCctgctacaacacacacacacacacac
>TU1945634
ggaggttgttCTACAGTTATCCCAGTCTCTAACCCATAATAACCCCACATCAGGAGGTTGTTCTACAGTTATCCCAGTCTCTAACCCATAATAACCCCACATCAGGAGGTTGTTCTACAGTTATCCCAGTCTCTAACCCATAATAACCCACATCAGGAGGTTGTTCTACAGTTATCCCAGTCTCTAACCCATAATAACCCATAGAATCATCACCATGGAAACAGCTTATCATCTGCTCAACCTCTATTATTTATTTGtccatgtatctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatatgtgtatatgtgtttgaGGTCAGCTGTTCCAACAACATGGAAACTCATTCCACCAGTAGGTCTAACTAACGAGCAGTAAGAAACCATGTTTGGTCCAACACAAACCctgctacaacacacacacacacacac
>TU1945632
ggaggttgttCTACAGTTATCCCAGTCTCTAACCCATAATAACCCCACATCAGGAGGTTGTTCTACAGTTATCCCAGTCTCTAACCCATAATAACCCCACATCAGGAGGTTGTTCTACAGTTATCCCAGTCTCTAACCCATAATAACCCACATCAGGAGGTTGTTCTACAGTTATCCCAGTCTCTAACCCATAATAACCCCACATCAGGAGGTTGTTCTACAGTTATCCCAGTCTCTAACCCATAATAACCCCACATCAGGAGGTTGTTCTACAGTTATCCCAGTCTCTAACCCATAATAACCCCACATCAGGAAGTTGTTCTACAGTTATGCCAGTCTCTAACCCATAATAACCCCACATCAGGAGGTTGTTCTACAGTTATCCCAGTCTCTAACCCATAATAACCCATAGAATCATCACCATGGAAACAGCTTATCATCTGCTCAACCTCTATTATTTATTTGtccatgtatctgtgtgtgtgtgtgtgtgt
>TU1945633
ggaggttgttCTACAGTTATCCCAGTCTCTAACCCATAATAACCCCACATCAGGAGGTTGTTCTACAGTTATCCCAGTCTCTAACCCATAATAACCCACATCAGGAGGTTGTTCTACAGTTATCCCAGTCTCTAACCCATAATAACCCCACATCAGGAGGTTGTTCTACAGTTATCCCAGTCTCTAACCCATAATAACCCCACATCAGGAAGTTGTTCTACAGTTATGCCAGTCTCTAACCCATAATAACCCCACATCAGGAGGTTGTTCTACAGTTATCCCAGTCTCTAACCCATAATAACCCATAGAATCATCACCATGGAAACAGCTTATCATCTGCTCAACCTCTATTATTTATTTGtccatgtatctgtgtgtgtgtgtgtgtgt
>TU1945637
ggaggttgttCTACAGTTATCCCAGTCTCTAACCCATAATAACCCCACATCAGGAGGTTGTTCTACAGTTATCCCAGTCTCTAACCCATAATAACCCACATCAGGAGGTTGTTCTACAGTTATCCCAGTCTCTAACCCATAATAACCCCACATCAGGAGGTTGTTCTACAGTTATCCCAGTCTCTAACCCATAATAACCCCACATCAGGAGGTTGTTCTACAGTTATCCCAGTCTCTAACCCATAATAACCCCACATCAGGAAGTTGTTCTACAGTTATGCCAGTCTCTAACCCATAATAACCCCACATCAGGAGGTTGTTCTACAGTTATCCCAGTCTCTAACCCATAATAACCCATAGAATCATCACCATGGAAACAGCTTATCATCTGCTCAACCTCTATTATTTATTTGtccatgtatctgtgtgtgtgtgtgtgtgt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1945630 False 575 lncRNA 0.43 2 74586 75368
TU1945634 False 471 lncRNA 0.43 2 74586 75368
TU1945632 False 494 lncRNA 0.43 2 74771 75368
TU1945633 False 390 lncRNA 0.42 3 74771 75368
TU1945637 True 442 lncRNA 0.43 3 74771 75368

Neighbor

gene id symbol gene type direction distance location
LOC118942822 NA coding upstream 185746 261114 ~ 265635 (-)
LOC110517722 LOC106590767 coding upstream 270605 345973 ~ 348985 (-)
LOC118942823 NA coding upstream 506006 581374 ~ 597675 (-)
cacna2d4a cacna2d4 coding upstream 510367 585735 ~ 785374 (-)
LOC110516566 LOC106576623 coding upstream 749222 824590 ~ 851766 (-)
G1700211 NA non-coding upstream 7047 82415 ~ 83331 (-)
G1700222 NA non-coding upstream 28603 103971 ~ 106830 (-)
G1700236 NA non-coding upstream 52086 127454 ~ 129615 (-)
G1700229 NA non-coding upstream 89242 164610 ~ 204375 (-)
G1700248 NA non-coding upstream 92123 167491 ~ 177188 (-)
G1700312 NA other upstream 277119 352487 ~ 354509 (-)
LOC110511372 LOC106592130 other upstream 1243859 1319221 ~ 1348497 (-)
LOC118942825 frs2 other upstream 1293781 1363229 ~ 1446417 (-)
LOC110512520 LOC106609724 other upstream 2047161 2113042 ~ 2128710 (-)
G1701041 NA other upstream 2113065 2188433 ~ 2189666 (-)

Expression


Co-expression Network