G1700229


Basic Information

Item Value
gene id G1700229
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 164610 ~ 204375 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1945670
AAAAGGGACCCTAGGAAGGGTACACACATGATGAAACCACCCTACATAGGGACCCTAGGAAGGGTACACACATGATGAAACCACCCTACATAGGGACCCTAGTTAGGATAACAGACATGACAAACCACCCTACATAGGGACCCTAGGAAGGGTAAAGAGAAGGGGACTAGGACAGGAGAGCAGTTTTGAATCAGACCCACAGTACAGGACAGACCCACAGTACAGGACAGACCCACAGTACAGGACAGACACATTTTACAGGACAACTTCATGGCTATTAGAATTTCCCCAGGTAATATACAGCTGTTTCTATGACAACTCACTCACTAACAGGAAAGGTGAAGTTTATTAACAGAGACTGAAATGGGGAGCTGACCTGAAACTAGTGGCTGCAAATgaaatacactctctctctcaaatcaaatcaatttaagggctttattggcatggaaacatgtatttacgttgccaaagcaagtgaaattgataaacaaaagtgaaataaacaataaaaagtgaacaataaatattacactcacacaagtttgtctctctctctctctgtctctctgtctctctctctctctgtctctctctctctgtctctctctctctctctctgtctctctctctctctctctctctgtctctctctctctgtctctctctctctctctcgctgtccatCCATCCAGTCAGTCATTCTTCAGGGAGGTTTATAACGGAGGGTAGATGGAGAAAGCAGAAGAGAACAGCTCCACCTCACACACTGTcggtgtaccaaatggcaccctattccctacatagtgcactactttagaccagggcctataggactctatgtagggaataggatgccatttgggacactcccACAGACAGACACGGTTCTCATTTTGGTTCATGTGTTCCACAACACAGGGGGGGGGTGTCAGACTCCCAGCCAACTTGGCTAGAACAAACACCAGGAGTCTCCAGAGACTAATAGTCCCAGAAATAATTACAAAATCACATCGCTGTGTTTTCTTTACAATGTCTGATTGTCAGATGTGTGTTTTAGAGTGGGGTGAAATAATCACCCTCTAACACTCCCCGAGACGCTTCTGCAATGCAGGGAGTCCTTTCTATAAGTCATGTTTAGAGACAAACactaagcatgtgtgtgtgtgtgtgtgtgtgtgtgtttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtagtcagtgtaATGGTATGGACAGGGACGTCAGTGAGCTCACATGAACAGTCCATCACATGTTACAGTGAGAGTTCTAGaccatctataccataaataccatctataccataaataccatctataccatctataccatctataccataaataccatctataccagagataccatctataccatagatacaatctataccatctataccatctataccataaataccattTATACCATagataccatctataccatctataccataaataccatctataccatctataccatctataccataaataccatctataccatctataccatagataccatctataccatagataccatctataccatctataccatctttaccatctataccataaataccatctata
>TU1945671
AAAAGGGACCCTAGGAAGGGTACACACATGATGAAACCACCCTACATAGGGACCCTAGGAAGGGTACACACATGATGAAACCACCCTACATAGGGACCCTAGTTAGGATAACAGACATGACAAACCACCCTACATAGGGACCCTAGGAAGGGTAAAGAGAAGGGGACTAGGACAGGAGAGCAGTTTTGAATCAGACCCACAGTACAGGACAGACCCACAGTACAGGACAGACCCACAGTACAGGACAGACACATTTTACAGGACAACTTCATGGCTATTAGAATTTCCCCAGGTAATATACAGCTGTTTCTATGACAACTCACTCACTAACAGGAAAGGTGAAGTTTATTAACAGAGACTGAAATGGGGAGCTGACCTGAAACTAGTGGCTGCAAATgaaatacactctctctctcaaatcaaatcaatttaagggctttattggcatggaaacatgtatttacgttgccaaagcaagtgaaattgataaacaaaagtgaaataaacaataaaaagtgaacaataaatattacactcacacaagtttgtctctctgtctctctctgtctctgtctctctgtctctctct

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1945670 False 1649 lncRNA 0.42 3 164610 204375
TU1945671 True 589 lncRNA 0.42 2 203737 204375

Neighbor

gene id symbol gene type direction distance location
LOC118942822 NA coding upstream 56739 261114 ~ 265635 (-)
LOC110517722 LOC106590767 coding upstream 141598 345973 ~ 348985 (-)
LOC118942823 NA coding upstream 376999 581374 ~ 597675 (-)
cacna2d4a cacna2d4 coding upstream 381360 585735 ~ 785374 (-)
LOC110516566 LOC106576623 coding upstream 620215 824590 ~ 851766 (-)
G1700236 NA non-coding downstream 34995 127454 ~ 129615 (-)
G1700222 NA non-coding downstream 57780 103971 ~ 106830 (-)
G1700211 NA non-coding downstream 81279 82415 ~ 83331 (-)
G1700204 NA non-coding downstream 89242 74586 ~ 75368 (-)
G1700264 NA non-coding upstream 13070 217445 ~ 218977 (-)
G1700268 NA non-coding upstream 23063 227438 ~ 227996 (-)
G1700277 NA non-coding upstream 41226 245601 ~ 245934 (-)
G1700290 NA non-coding upstream 64383 268758 ~ 268991 (-)
G1700312 NA other upstream 148112 352487 ~ 354509 (-)
LOC110511372 LOC106592130 other upstream 1114852 1319221 ~ 1348497 (-)
LOC118942825 frs2 other upstream 1164774 1363229 ~ 1446417 (-)
LOC110512520 LOC106609724 other upstream 1918154 2113042 ~ 2128710 (-)
G1701041 NA other upstream 1984058 2188433 ~ 2189666 (-)

Expression


Co-expression Network