G1700387


Basic Information

Item Value
gene id G1700387
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 563762 ~ 566319 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1945866
CCCAGAATCCAAACCCTTTTTATTAGAACAATTACAGCAGATATAAAGACCTATTGTAAATCCCACAGTCACCACTGGACACGTGCTTCAACAAACAATATGCACTtccccaaacaaacaaacaatatgCACTtccccaaacaaacaaacaaaaagaaataaattaataattaaaaaacaacaaacatctgTTTTCCTTTGATGTTTTTTTCTGTTGAAATGTCACAATGAAACAAAAGGCCTTGTAATTCTGGGTCTGAAGATTGAGAAGACATCTATATCGTCTCAACACAGAGCATTAAGGGACctcctagcctggtctcagatctctTTGTGCCGTCGAGCCAACTCTTGACGGTCACAGTCTGACAATGAGTtgggcaagacagcacaaacacatctgggaccaggctatcaaGGACCCAAACCCAAGAGAAGGACAGAAAAAGGGAGAAGAACTCCTTCCTCCTAAAAGAGTCGAGTGGAAACTGCCTCCCTGATTATGTTTAACTCCGATGATCAAACACACTCCTCTACAACAGAGTTATATGGAGGGTTTAAGGGTCCGACTCCACTGTCTGGTCTCGACTAGTTGCCAGATCTGTACAGGCTTCCGACTATCAACGTCATGGCATTATTTTACTAAAGCACATAGTGGACCTGGCAACCAAGCTAGGAGGGACCCCTGTTCTCCAGTGGAACTGAGATCAAGGTCTTAGATGCACTGCCTGTATATCgtcataatgaatacatgtcTGTTAGTGTTTAAACTGGAGCGACAGGTACAGAAGCAGTACGACTGAGCAGGTGTGTGGCGGATGAATCtgaagtggagagagaaagaaggctCTCAGCCTCAGCACAGCTGTGCACCGTGGCGTAGATACACGTCTAGAAAGTAGATCTGATACATATGAATAACTAAAAAGGACTCAATTCAATCCGTACCGCCGAAGCTCACCTCCCATTGAGCCGACTTACGCAGCGTTTACCACGAACGCAGTCTCAGCGAGACGATTGCTTTTAAAATGTCAAATCGTGTTTTAACGCTGAACTTCAACAatggattgaatcgagccctgaTACACGAAGCTCTAAAACAGACCCCCCAGAGTGTTGTGAAACCGCTCTGAGGGAATCTGCTATTACATGTTTCAATCTTTTCAAAATCACATACACACCCtttaaaagagaatagaaaaccTCCCCCAAAACAGACACAATCACAACGGTATTGGATCAAGAAAACCTCCCCAAAACAGACACAATCACAACGGTATTGGATCAAGAAAACCCCCAACTTAAAGCCTGTGATGATAATGAATAATAGACTAAATAATAacattcaaaatcaaataaaaaaacacattttagagATGCATATTTTGTTCTGAAATATTGATCTTCTGTTTTTATTTccgggtcccaaatggcacactattccctacataggtcACTCactacctggtcaaaagtagtgcactaaatagggaatagggtgccctttggtcCGTAATCTTAAAGTCAATGAATCACACACTTCACACAAAACGTAGTACAAAGTCACTTTATACCAGAGCAGAAAGAGAGGCTCAACTTGGTAAGGAGATAGAAACGGACAACCTTTCACTGATGACGGTTTCACTGAGGGGGGTCGAGGAACTGAAACCTGTTCCCTTATATATCGTTGTACTACTATTGACTTTACgttgggctctggtcagaagtagtgcactatataaaaaagggaatagtgtgccagtTTGGACGAGCACCAACGTTGGTTTCTAATGTTAGGGAAGGAAGGGTCGTGTTGACTGCTGGGATGACACACTAGATGTCACAGTCTAATGGAATGAGATGAAGTAGCTACTAGCTACACGTGAAGACATaacagcaccctattcctcatgtagtgcactactgttgaaaaGAATACGAACAGAATGCAGCACCTGATTTGTCGACTGGGGCTCAACGTCAGCCAGTCACAGGTCACATCTCCACCCAGGGCTTAACCCTTGCTGAGCCTCCTCCCTCGTTGTGAAGttggctctccctctccccttcacgtGTCTCAACTCTTTGTGCCATAGCTCCCTTCAACAGTGTGTGGTTCTCCTATATTCCCCACTTCACTTCCCCCCTCTGACCAAATGGTTTATACACAGATGGTGTTTTCTTGGTTGTTGCCTCATCATCTGtcgattttttttaaaaattcaatatcttaacattttttttgtatttatttaatgtttttatttatttattattatatatatttaatacaaATCTATATAACCCGAATTTAGAAATCTTATTTACATGAACAAAGTTGGAAAGCGTCTAGCCTGCCCGTCCCCCCAGGCCACACCCACCCTTTtcatggaagaaaaaaaatacttCACACATAATtacattttctttctttctttctgtaaaGCTTTTCTACCCAACACTAGAGCATTCAGAAACCCCCACCACTAGAGCATTCAGAAACCCCCACCA
>TU1945867
CCCAGAATCCAAACCCTTTTTATTAGAACAATTACAGCAGATATAAAGACCTATTGTAAATCCCACAGTCACCACTGGACACGTGCTTCAACAAACAATATGCACTtccccaaacaaacaaacaatatgCACTtccccaaacaaacaaacaaaaagaaataaattaataattaaaaaacaacaaacatctgTTTTCCTTTGATGTTTTTTTCTGTTGAAATGTCACAATGAAACAAAAGGCCTTGTAATTCTGGGTCTGAAGATTGAGAAGACATCTATATCGTCTCAACACAGAGCATTAAGGGACctcctagcctggtctcagatctctTTGTGCCGTCGAGCCAACTCTTGACGGTCACAGTCTGACAATGAGTtgggcaagacagcacaaacacatctgggaccaggctatcaaGGACCCAAACCCAAGAGAAGGACAGAAAAAGGGAGAAGAACTCCTTCCTCCTAAAAGAGTCGAGTGGAAACTGCCTCCCTGATTATGTTTAACTCCGATGATCAAACACACTCCTCTACAACAGAGTTATATGGAGGGTTTAAGGGTCCGACTCCACTGTCTGGTCTCGACTAGTTGCCAGATCTGTACAGGCTTCCGACTATCAACGTCATGGCATTATTTTACTAAAGCACATAGTGGACCTGGCAACCAAGCTAGGAGGGACCCCTGTTCTCCAGTGGAACTGAGATCAAGGTCTTAGATGCACTGCCTGTATATCgtcataatgaatacatgtcTGTTAGTGTTTAAACTGGAGCGACAGGTACAGAAGCAGTACGACTGAGCAGGTGTGTGGCGGATGAATCtgaagtggagagagaaagaaggctCTCAGCCTCAGCACAGCTGTGCACCGTGGCGTAGATACACGTCTAGAAAGTAGATCTGATACATATGAATAACTAAAAAGGACTCAATTCAATCCGTACCGCCGAAGCTCACCTCCCATTGAGCCGACTTACGCAGCGTTTACCACGAACGCAGTCTCAGCGAGACGATTGCTTTTAAAATGTCAAATCGTGTTTTAACGCTGAACTTCAACAatggattgaatcgagccctgaTACACGAAGCTCTAAAACAGACCCCCCAGAGTGTTGTGAAACCGCTCTGAGGGAATCTGCTATTACATGTTTCAATCTTTTCAAAATCACATACACACCCtttaaaagagaatagaaaaccTCCCCCAAAAAACAGACACAATCACAACGGTATTGGATCAAGAAAACCCCCAACTTAAAGCCTGTGATGATAATGAATAATAGACTAAATAATAacattcaaaatcaaataaaaaaacacattttagagATGCATATTTTGTTCTGAAATATTGATCTTCTGTTTTTATTTccgggtcccaaatggcacactattccctacataggtcACTCactacctggtcaaaagtagtgcactaaatagggaatagggtgccctttggtcCGTAATCTTAAAGTCAATGAATCACACACTTCACACAAAACGTAGTACAAAGTCACTTTATACCAGAGCAGAAAGAGAGGCTCAACTTGGTAAGGAGATAGAAACGGACAACCTTTCACTGATGACGGTTTCACTGAGGGGGGTCGAGGAACTGAAACCTGTTCCCTTATATATCGTTGTACTACTATTGACTTTACgttgggctctggtcagaagtagtgcactatataaaaaagggaatagtgtgccagtTTGGACGAGCACCAACGTTGGTTTCTAATGTTAGGGAAGGAAGGGTCGTGTTGACTGCTGGGATGACACACTAGATGTCACAGTCTAATGGAATGAGATGAAGTAGCTACTAGCTACACGTGAAGACATaacagcaccctattcctcatgtagtgcactactgttgaaaaGAATACGAACAGAATGCAGCACCTGATTTGTCGACTGGGGCTCAACGTCAGCCAGTCACAGGTCACATCTCCACCCAGGGCTTAACCCTTGCTGAGCCTCCTCCCTCGTTGTGAAGttggctctccctctccccttcacgtGTCTCAACTCTTTGTGCCATAGCTCCCTTCAACAGTGTGTGGTTCTCCTATATTCCCCACTTCACTTCCCCCCTCTGACCAAATGGTTTATACACAGATGGTGTTTTCTTGGTTGTTGCCTCATCATCTGtcgattttttttaaaaattcaatatcttaacattttttttgtatttatttaatgtttttatttatttattattatatatatttaatacaaATCTATATAACCCGAATTTAGAAATCTTATTTACATGAACAAAGTTGGAAAGCGTCTAGCCTGCCCGTCCCCCCAGGCCACACCCACCCTTTtcatggaagaaaaaaaatacttCACACATAATtacattttctttctttctttctgtaaaGCTTTTCTACCCAACACTAGAGCATTCAGAAACCCCCACCACTAGAGCATTCAGAAACCCCCACCA
>TU1945868
CCCAGAATCCAAACCCTTTTTATTAGAACAATTACAGCAGATATAAAGACCTATTGTAAATCCCACAGTCACCACTGGACACGTGCTTCAACAAACAATATGCACTtccccaaacaaacaaacaatatgCACTtccccaaacaaacaaacaaaaagaaataaattaataattaaaaaacaacaaacatctgTTTTCCTTTGATGTTTTTTTCTGTTGAAATGTCACAATGAAACAAAAGGCCTTGTAATTCTGGGTCTGAAGATTGAGAAGACATCTATATCGTCTCAACACAGAGCATTAAGGGACctcctagcctggtctcagatctctTTGTGCCGTCGAGCCAACTCTTGACGGTCACAGTCTGACAATGAGTtgggcaagacagcacaaacacatctgggaccaggctatcaaGGACCCAAACCCAAGAGAAGGACAGAAAAAGGGAGAAGAACTCCTTCCTCCTAAAAGAGTCGAGTGGAAACTGCCTCCCTGATTATGTTTAACTCCGATGATCAAACACACTCCTCTACAACAGAGTTATATGGAGGGTTTAAGGGTCCGACTCCACTGTCTGGTCTCGACTAGTTGCCAGATCTGTACAGGCTTCCGACTATCAACGTCATGGCATTATTTTACTAAAGCACATAGTGGACCTGGCAACCAAGCTAGGAGGGACCCCTGTTCTCCAGTGGAACTGAGATCAAGGTCTTAGATGCACTGCCTGTATATCgtcataatgaatacatgtcTGTTAGTGTTTAAACTGGAGCGACAGGTACAGAAGCAGTACGACTGAGCAGGTGTGTGGCGGATGAATCtgaagtggagagagaaagaaggctCTCAGCCTCAGCACAGCTGTGCACCGTGGCGTAGATACACGTCTAGAAAGTAGATCTGATACATATGAATAACTAAAAAGGACTCAATTCAATCCGTACCGCCGAAGCTCACCTCCCATTGAGCCGACTTACGCAGCGTTTACCACGAACGCAGTCTCAGCGAGACGATTGCTTTTAAAATGTCAAATCGTGTTTTAACGCTGAACTTCAACAatggattgaatcgagccctgaTACACGAAGCTCTAAAACAGACCCCCCAGAGTGTTGTGAAACCGCTCTGAGGGAATCTGCTATTACATGTTTCAATCTTTTCAAAATCACATACACACCCtttaaaagagaatagaaaaccTCCCCCAAAAACCAGACACAATCACAACGGTATTGATCAAGAAAACCCCCAACTTAAAGCCTGTGATGATAATGAATAATAGACTAAATAATAacattcaaaatcaaataaaaaaacacattttagagATGCATATTTTGTTCTGAAATATTGATCTTCTGTTTTTATTTccgggtcccaaatggcacactattccctacataggtcACTCactacctggtcaaaagtagtgcactaaatagggaatagggtgccctttggtcCGTAATCTTAAAGTCAATGAATCACACACTTCACACAAAACGTAGTACAAAGTCACTTTATACCAGAGCAGAAAGAGAGGCTCAACTTGGTAAGGAGATAGAAACGGACAACCTTTCACTGATGACGGTTTCACTGAGGGGGGTCGAGGAACTGAAACCTGTTCCCTTATATATCGTTGTACTACTATTGACTTTACgttgggctctggtcagaagtagtgcactatataaaaaagggaatagtgtgccagtTTGGACGAGCACCAACGTTGGTTTCTAATGTTAGGGAAGGAAGGGTCGTGTTGACTGCTGGGATGACACACTAGATGTCACAGTCTAATGGAATGAGATGAAGTAGCTACTAGCTACACGTGAAGACATaacagcaccctattcctcatgtagtgcactactgttgaaaaGAATACGAACAGAATGCAGCACCTGATTTGTCGACTGGGGCTCAACGTCAGCCAGTCACAGGTCACATCTCCACCCAGGGCTTAACCCTTGCTGAGCCTCCTCCCTCGTTGTGAAGttggctctccctctccccttcacgtGTCTCAACTCTTTGTGCCATAGCTCCCTTCAACAGTGTGTGGTTCTCCTATATTCCCCACTTCACTTCCCCCCTCTGACCAAATGGTTTATACACAGATGGTGTTTTCTTGGTTGTTGCCTCATCATCTGtcgattttttttaaaaattcaatatcttaacattttttttgtatttatttaatgtttttatttatttattattatatatatttaatacaaATCTATATAACCCGAATTTAGAAATCTTATTTACATGAACAAAGTTGGAAAGCGTCTAGCCTGCCCGTCCCCCCAGGCCACACCCACCCTTTtcatggaagaaaaaaaatacttCACACATAATtacattttctttctttctttctgtaaaGCTTTTCTACCCAACACTAGAGCATTCAGAAACCCCCACCACTAGAGCATTCAGAAACCCCCACCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1945866 False 2511 lncRNA 0.42 2 563762 566319
TU1945867 False 2468 lncRNA 0.42 2 563762 566319
TU1945868 True 2467 lncRNA 0.42 2 563762 566319

Neighbor

gene id symbol gene type direction distance location
LOC110517722 LOC106590767 coding downstream 214777 345973 ~ 348985 (-)
LOC118942822 NA coding downstream 298127 261114 ~ 265635 (-)
LOC118942823 NA coding upstream 15055 581374 ~ 597675 (-)
cacna2d4a cacna2d4 coding upstream 19416 585735 ~ 785374 (-)
LOC110516566 LOC106576623 coding upstream 258271 824590 ~ 851766 (-)
LOC110511372 LOC106592130 coding upstream 752902 1319221 ~ 1348497 (-)
LOC110527029 LOC106592131 coding upstream 782280 1348599 ~ 1357031 (-)
G1700396 NA non-coding downstream 11959 548312 ~ 551803 (-)
G1700358 NA non-coding downstream 13186 476903 ~ 550576 (-)
G1700385 NA non-coding downstream 20290 542441 ~ 543472 (-)
G1700365 NA non-coding downstream 73941 488294 ~ 489821 (-)
G1700319 NA non-coding downstream 150639 377209 ~ 413123 (-)
G1700393 NA non-coding upstream 21265 587584 ~ 588894 (-)
G1700444 NA non-coding upstream 108216 674535 ~ 675992 (-)
G1700445 NA non-coding upstream 109790 676109 ~ 676602 (-)
G1700453 NA non-coding upstream 120565 686884 ~ 687473 (-)
G1700312 NA other downstream 209253 352487 ~ 354509 (-)
LOC118942825 frs2 other upstream 802830 1363229 ~ 1446417 (-)
LOC110512520 LOC106609724 other upstream 1556210 2113042 ~ 2128710 (-)
G1701041 NA other upstream 1622114 2188433 ~ 2189666 (-)
G1701824 NA other upstream 2006355 2572603 ~ 2577051 (-)

Expression


Co-expression Network