G1700451


Basic Information

Item Value
gene id G1700451
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 711686 ~ 713813 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1945962
TTAAGGAAAtacattctttatttttttttttaacatttcaacattcttttatacatatatatatatatgcccacAAATGTTATTTCAAACAGCTTGTTATCTTCAGCAAAAAATAAAGAAGCATTTTAGTATCATCCCTTATAGTTTCATTATAACAATCTTAGAAAAAACGACAGagaggtaaataaataaatatagaatAAAATATAGAATAAATTAATGGACGGTAAAATTAAATAACAAGGCAGAATAGAGGAGATTCATCCAAGCCCACTTCAAGGGGcaacgctctgtctctctctctctctgtctctgtctctctctctctctctctctctctctgtctctctctctctctctttctctccccctctctctttctctctctttctctccccctctctctttctctctgtctctctctctctgtctctctctctctctctctctgtctctctctctgtctccctctgtctctctctctctctctctctctctctctctctgtctctatctctgtctctgtctctctctgtctctctctgtctctctctgtctctctctctctctctctctgtctctctctctctctctgtctctctctctgtctctctctctctctgtctttctcttgctctctcacacactttctctatctctctctctctgtctgtctctttctctctctcgctctctctctctctctctctcacacactttctctctctctctctctctctctctctctctcactctctctctctctctctctctctctctctctctctctctctctctctccctctctgtctcgctcactctcgctcactctctctttctatcttttttCTCCCAACATGAGTTTAAACAACAGCCACATCATTGTGCTTCATCCATACCAACAGATGCCAGACCtgggttacgtcccaaatggcaaccctattccctatctagtgcccaCACTCTGGTAATAGGTAGTGCCTTATGTAATTACTCAGGCCTCGGGCCTGTATTCACATTAATAGGGATTATTAACCACTAGATCAAAGCAGTACCAGTCTGTTGGTGCCATCATGCCAACTACTTGTCACTCCTTGTCACGCTAAaacatgtttggcttgacaatgacagcaaTAAGTTAAGTTGCCaagagaacaaacagatctgggatcaggttagAGCCATGCCGTCTTTGGGGATGCGTTCAACATAACGTTAGTGTTTTATTGTTGTTGATCACCCTCGTTGATTGACAGTTGGTTAGTTGAGGACAATCCTCATATTGTACACTACACAAGTGCGTCGCAGCCTTGATTCTCAGTGACATCATTGCAACAGTCTGTAATGAACCAGTCTGTAATTAACCAGTCTGTAATGAACCAGTCTGTAATGAACCAGTCTGTAATGAATGCAGGAACCAGTATTATACTACAGGCTACACTGACAGGAACGCAGCAGGGTCATTTCATCACCCATAATACTTATCTTCGGGTATAGTTAGTTCATATTATAATAGTATTTACCACAATCAACACGACAATAAAGACGATGGGGTTTTATAGCAACTCACCCCTCTTATGCTTTCGAGTTATTTCAATAATACTATTTTCAATGTTATTCTCGGAGACACTGTTCAGAAAATGTCTAGACATTGTATTATATTACTTGATACATATGTACTATTATATAGAACTTCTTCAGGATATGTAATGAGTTAATGACAAACATATAGGAACTCTGACAGCGCGTTCAGACGTCTTAGAAGAGCCCGTTTGAAGAAAATGAGGTTTTTGAAGCACCCTGATCAAATCTCGTGTTTAATTCAGAATGAAGAAAGATGAGACCTAAATTATATATAAAATATTGTCACACATGAAATTGCTTTGTTTCTCACGTTATTTCAAGGTATAAGAATGATTTTCAAAATGTCCTCATTCACACACACGGCAGTTCCGCTCGTGCACCGTGCTATGCTCCCTTCTACCTCCGGGTGGCACTGTTGCTACCCAGATCTGCATACATGGACATGT
>TU1945963
TTAAGGAAAtacattctttatttttttttttaacatttcaacattcttttatacatatatatatatatgcccacAAATGTTATTTCAAACAGCTTGTTATCTTCAGCAAAAAATAAAGAAGCATTTTAGTATCATCCCTTATAGTTTCATTATAACAATCTTAGAAAAAACGACAGagaggtaaataaataaatatagaatAAAATATAGAATAAATTAATGGACGGTAAAATTAAATAACAAGGCAGAATAGAGGAGATTCATCCAAGCCCACTTCAAGGGGcaacgctctgtctctctctctctctgtctctgtctctctctctctctctctctctctctgtctctctctctctctctttctctccccctctctctttctctctctttctctccccctctctctttctctctgtctctctctctctgtctctctctctctctctctctgtctctctctctgtctccctctgtctctctctctctctctctctctctctctctctgtctctatctctgtctctgtctctctctgtctctctctgtctctctctctctctgtctctctctgtctctctctgtctctctctctctctctctctgtctctctctctctctctgtctctctctctgtctctctctctctctgtctttctcttgctctctcacacactttctctatctctctctctctgtctgtctctttctctctctcgctctctctctctctctctctcacacactttctctctctctctctctctctctctctctctcactctctctctctctctctctctctctctctctctctctctctctctctccctctctgtctcgctcactctcgctcactctctctttctatcttttttCTCCCAACATGAGTTTAAACAACAGCCACATCATTGTGCTTCATCCATACCAACAGATGCCAGACCtgggttacgtcccaaatggcaaccctattccctatctagtgcccaCACTCTGGTAATAGGTAGTGCCTTATGTAATTACTCAGGCCTCGGGCCTGTATTCACATTAATAGGGATTATTAACCACTAGATCAAAGCAGTACCAGTCTGTTGGTGCCATCATGCCAACTACTTGTCACTCCTTGTCACGCTAAaacatgtttggcttgacaatgacagcaaTAAGTTAAGTTGCCaagagaacaaacagatctgggatcaggttagAGCCATGCCGTCTTTGGGGATGCGTTCAACATAACGTTAGTGTTTTATTGTTGTTGATCACCCTCGTTGATTGACAGTTGGTTAGTTGAGGACAATCCTCATATTGTACACTACACAAGTGCGTCGCAGCCTTGATTCTCAGTGACATCATTGCAACAGTCTGTAATGAACCAGTCTGTAATTAACCAGTCTGTAATGAACCAGTCTGTAATGAACCAGTCTGTAATGAATGCAGGAACCAGTATTATACTACAGGCTACACTGACAGGAACGCAGCAGGGTCATTTCATCACCCATAATACTTATCTTCGGGTATAGTTAGTTCATATTATAATAGTATTTACCACAATCAACACGACAATAAAGACGATGGGGTTTTATAGCAACTCACCCCTCTTATGCTTTCGAGTTATTTCAATAATACTATTTTCAATGTTATTCTCGGAGACACTGTTCAGAAAATGTCTAGACATTGTATTATATTACTTGATACATATGTACTATTATATAGAACTTCTTCAGGATATGTAATGAGTTAATGACAAACATATAGGAACTCTGACAGCGCGTTCAGACGTCTTAGAAGAGCCCGTTTGAAGAAAATGAGGTTTTTGAAGCACCCTGATCAAATCTCGTGTTTAATTCAGAATGAAGAAAGATGAGACCTAAATTATATATAAAATATTGTCACACATGAAATTGCTTTGTTTCTCACGTTATTTCAAGGTATAAGAATGATTTTCAAAATGTCCTCATTCACACACACGGCAGTTCCGCTCGTGCACCGTGCTATGCTCCCTTCTACCTCCGGGTGGCACTGTTGCTACCCAGATCTGCATACATGGACATGT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1945962 False 2030 lncRNA 0.41 3 711686 713813
TU1945963 True 2056 lncRNA 0.41 3 711686 713813

Neighbor

gene id symbol gene type direction distance location
LOC118942823 NA coding downstream 128669 581374 ~ 597675 (-)
LOC110517722 LOC106590767 coding downstream 362701 345973 ~ 348985 (-)
LOC118942822 NA coding downstream 446051 261114 ~ 265635 (-)
LOC110516566 LOC106576623 coding upstream 110777 824590 ~ 851766 (-)
LOC110511372 LOC106592130 coding upstream 605408 1319221 ~ 1348497 (-)
LOC110527029 LOC106592131 coding upstream 634786 1348599 ~ 1357031 (-)
LOC118942825 frs2 coding upstream 649416 1363229 ~ 1446417 (-)
LOC110499705 LOC106609801 coding upstream 734991 1448804 ~ 1453886 (-)
G1700461 NA non-coding downstream 7073 703933 ~ 704613 (-)
G1700459 NA non-coding downstream 10786 700535 ~ 700900 (-)
G1700453 NA non-coding downstream 24213 686884 ~ 687473 (-)
G1700445 NA non-coding downstream 35084 676109 ~ 676602 (-)
G1700444 NA non-coding downstream 35694 674535 ~ 675992 (-)
G1700463 NA non-coding upstream 7343 721156 ~ 721476 (-)
G1700482 NA non-coding upstream 75415 789228 ~ 798363 (-)
G1700500 NA non-coding upstream 118206 832019 ~ 832544 (-)
G1700522 NA non-coding upstream 161231 875044 ~ 878302 (-)
G1700312 NA other downstream 357177 352487 ~ 354509 (-)
LOC110512520 LOC106609724 other upstream 1408716 2113042 ~ 2128710 (-)
G1701041 NA other upstream 1474620 2188433 ~ 2189666 (-)
G1701824 NA other upstream 1858861 2572603 ~ 2577051 (-)

Expression


Co-expression Network