G1699539


Basic Information

Item Value
gene id G1699539
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 821005 ~ 821238 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1944723
AGATAGAATAGACTAAAATAATGGACAGGTCATTGTTCCCATCTCAGCTGTTTCTATCTGATTTGTTGTATGTTGTTTCCCGTTAGGTTAGTGGCACTTCTCTCTTCCCGACTCATTTGAAGTCCTGATAAGGAGTCTAACCAGGAAAGCAAgagaaaaaggaaaaaaaaagagTCACTCACCTGTCTGTCAATCCACAGGTTAACTATCGAATCACAGTCCATCTCTGAAAAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1944723 True 234 lncRNA 0.40 1 821005 821238

Neighbor

gene id symbol gene type direction distance location
LOC118936449 LOC106575063 coding upstream 111005 647909 ~ 710000 (+)
LOC101268929 LOC101268929 coding upstream 254683 479755 ~ 566322 (+)
LOC118942821 wnt5b coding upstream 356431 225129 ~ 464574 (+)
LOC118942820 LOC108442871 coding upstream 626787 60262 ~ 194218 (+)
LOC118942824 LOC106609805 coding downstream 31793 853031 ~ 999564 (+)
LOC110518351 LOC103459268 coding downstream 335476 1156714 ~ 1305903 (+)
LOC110499702 tcpb coding downstream 655642 1476880 ~ 1487165 (+)
LOC118943024 NA coding downstream 662789 1484027 ~ 1484168 (+)
LOC110499710 LOC106596118 coding downstream 668455 1489693 ~ 1500056 (+)
G1699534 NA non-coding upstream 11402 809034 ~ 809603 (+)
G1699532 NA non-coding upstream 18263 800649 ~ 802742 (+)
G1699523 NA non-coding upstream 39643 779772 ~ 781362 (+)
G1699513 NA non-coding upstream 77757 738067 ~ 743248 (+)
G1699510 NA non-coding upstream 91887 728434 ~ 729118 (+)
G1699565 NA non-coding downstream 47132 868370 ~ 929611 (+)
G1699568 NA non-coding downstream 51839 873077 ~ 879296 (+)
G1699577 NA non-coding downstream 70997 892235 ~ 893040 (+)
G1699593 NA non-coding downstream 111709 932947 ~ 934038 (+)
G1699601 NA non-coding downstream 129649 950887 ~ 951687 (+)
G1699629 NA other downstream 261453 1082691 ~ 1086026 (+)
G1699655 NA other downstream 272911 1094149 ~ 1100221 (+)
G1699724 LOC106592130 other downstream 521261 1342499 ~ 1343138 (+)
G1699804 NA other downstream 716718 1537956 ~ 1538880 (+)

Expression


Co-expression Network