G1700582


Basic Information

Item Value
gene id G1700582
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 1017329 ~ 1018993 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1946117
GCTGGAATACGGCTCTATAATCCTCTGGGATCCATCTGGTGTGGCTGGAATACGGCTCTATAATCCTCTGGGATCCATCTGGTGTGGCTGGGATACGGCTCTATAATCCTCTAGGATCCATCTGGTGTGGCTGGGAATACGCCTCTATAATCCTCTAGGATCCATCTGGTGTGGCTGGGATACGGCTCTTTAGCTGGTTCTATCATCTGTAGAAGGTGGAGCactggcacgcacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacatcccttacTCCACTATTACACACAGTTTGTGTAGAGCTACTTAACTCAGAGgcctagctctctctgtctccaaccGTGCAACACACAGTAGGAATCAAAGGGAAACAAAGACCTTGCAGAACCTTGGTTCCTATTGTTGTTCCGTTACCAAGGGGAGGGCGGCGGTGCATCCGATCACCACTATGACTGCCTGGCGTATCCATGACAACCCTCGGCGCCTGCACACCTTTTCTTCTTCTGATTCGGTTGTCCTGGAGACAGCGCTGGTGCAGATGCCGTGGTAACTAAAAGCAGTACACAGCGATGGACGGACGGACGCCACGTGTACGTGATACCTCGGGGAGAATCACATCAGGCATGCTAGAAACGCGTCCACCAAAACATTCCCCACTGATACAGGTGTatcgagacacagagagatgtaTTTCAGAAAAAGGTCAGACTTATCATCATCGTCGTTGTtgttgtacatactgtacatcacgTCGCTACGTTGAACAGAGAATCGTCTGCATGGATTCAGATCTAGACCTctatcttcttctctctgtgcccCTGGGTCTGTAAAGTCAAACACCATCCtcgttcttcttctctctgtgcccCTGGGTCTGTAAAGTCAAACACCatcccctgtcttctctctgtgccCCTGGGTCTGTAAAGTCAAACACCatcccctgtcttctctctgtgccCCTGGGTCTGTAAAGTCAAACACCatcccctgtcttctctctgtgtctctgggtCTGTAAAGTCAAACACCatcccctgtcttctctctgtgtctctgggtCTGTAAAGTCAAACACcatcctctgtcttctctctgtgccCCTGGGTCTGTAAAGTCAAACACCatcccctgtcttctctctgtgccACTGGGTCTGTAAAGTCAAACACCatcccctgtcttctctctgtgccCCTGGGTCTGTAAAGTCAAACACcatcctctgtcttctctctgtgccCCTGGGTCTGTAAAGTCAGACTTATCATCATCAACCATCTCCAGTCCTATATTGTTCTGCTCAGCCTGGTCCCAAATCTGTTTGTAAACTCCtatggtaaacaggctacactctgctctctctgtcccagatctgtagtctaatagtggagtaaggaatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttgcgcgtgccgcgtgcgtgcatgtgtgtgtgtgtg

Function

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU1946117 True 1536 lncRNA 0.50 2 1017329 1018993

Neighbor

gene id symbol gene type direction distance location
LOC110516566 LOC106576623 coding downstream 165563 824590 ~ 851766 (-)
cacna2d4a cacna2d4 coding downstream 231955 585735 ~ 785374 (-)
LOC118942823 NA coding downstream 434312 581374 ~ 597675 (-)
LOC110517722 LOC106590767 coding downstream 668344 345973 ~ 348985 (-)
LOC118942822 NA coding downstream 751694 261114 ~ 265635 (-)
LOC110511372 LOC106592130 coding upstream 300228 1319221 ~ 1348497 (-)
LOC110527029 LOC106592131 coding upstream 329606 1348599 ~ 1357031 (-)
LOC118942825 frs2 coding upstream 344236 1363229 ~ 1446417 (-)
LOC110499705 LOC106609801 coding upstream 429811 1448804 ~ 1453886 (-)
LOC110499704 cpsf6 coding upstream 435573 1454566 ~ 1513068 (-)
G1700572 NA non-coding downstream 34979 981518 ~ 982350 (-)
G1700534 NA non-coding downstream 117199 899771 ~ 900130 (-)
G1700522 NA non-coding downstream 139027 875044 ~ 878302 (-)
G1700500 NA non-coding downstream 184785 832019 ~ 832544 (-)
G1700583 NA non-coding upstream 677 1019670 ~ 1021731 (-)
G1700584 NA non-coding upstream 2923 1021916 ~ 1024151 (-)
G1700569 NA non-coding upstream 14689 1033682 ~ 1034400 (-)
G1700610 NA non-coding upstream 70855 1089848 ~ 1090221 (-)
G1700612 NA non-coding upstream 79254 1098247 ~ 1103848 (-)
G1700312 NA other downstream 662820 352487 ~ 354509 (-)
LOC110512520 LOC106609724 other upstream 1103536 2113042 ~ 2128710 (-)
G1701041 NA other upstream 1169440 2188433 ~ 2189666 (-)
G1701824 NA other upstream 1553681 2572603 ~ 2577051 (-)

Expression

G1700582 Expression in all Baseline Samples

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The chart has 1 Y axis displaying values. Range: 0 to 5.
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G1700582 Expression in each Bioproject

Bar chart with 12 bars.
G1700582 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 40.
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Co-expression Network