G1700612


Basic Information

Item Value
gene id G1700612
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 1098247 ~ 1103848 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1946148
gtcccatcacacttcacaaccctctaacaaactggtgatcctcagagcccagcatgctgctcagaccactgtcccatcacaaccctctaactggtgatcctcagagcccagcatgctgctcagaccactgtctCATCACAGTTCACAACCCTCTAACaaactggtgatcctcagagcccagcatgctgctcagaccactgtcccatcacacttcacaaccctctaacaaactggtgatcctcagagcccagcatgctgctcagaccactgccccatcacacttcacaaccctctaacaaactggtgatcctcagagcccagcatgctgctcagaccactgccccatcacacttcacaaccctctaacaaactggtgatcctcagagcccagcatgctgctcacaccactgtcccatcacacttcacaaccctctaacaaactggtgatcctcagagcccagcatgctgctcagaccactgtcccatcacaaccctctaactggtgatcctcagagcccagcatgctgctcagaccactgtcccatcacaaccctctaactggtgatcctcagagccaagcatgctgctcagaccactgtcccatcacaaccctctaactggtgatcctcagagcccagcatgctgatcagaccactgtcccatcacaaccctctaactggtgatcctcagagcccagcatgctgctcagaccactgtcccatcacagttcacaaccctctaacaaactggtgatcctcagagcccagcatgctgctcagaccactgtcccatcacacttaacaaccctctaacaaactggtgatcctcagagcccagcatgctgctcagaccactgccccatcacacttcacaaccctctaacaaactggtgatcctcagagcccagcatgctgctcagaccactgccccatcacacttcacaaccctctaacaaactggtgatcctcagagcccagtatgctgctcagaccactgtcccatcacacttcacaaccctctaacaaactggtgatcctcagagcccagcattctgctcagaccactgtcccatcacaaccctctaactggtgatcctcagagcccagcatgcctctcagaccactgtcccatcacaaccctctaactggtgatcctcagagcccagcatgctgctcagaccactgtcccatcacaaccctctaactggtgatcctcagagcccagAATGCTGCTCAGACCActgtcccatcacaaccCTCTAACTGGTGACcctcagagcccagcatgctgctcagaccactgtcccatcacaaccctctaactggtgatcctcagagcccagcatgctgctcagaccaGAATAGTTCATGACACTTGATTGTAAAAGCGTCGTTGTTTAACTGTGATTTAGTTACTATTAACCTGTTAActagttgtttctgttttaaccttaaccactcagaattaaTACCTAACCTGTTAACTAGTTAActagttgtttctgttttaaccatgtaaccatgcagaattaataCCTAAACTATTAACCTGTTAActagttgtttctgttttaaccttaaccactcaTAATTAATACCTAAACTATTAACCTGTTAActagttgtttctgttttaaccatgtaaccatgcagaattaataCCTAAACTATTAACCTGTTAACTAGTTGTTTCTGTgttaaccttaaccactcagaatgaatacctaaactattaactagttaactagttgtttctgttttaaccatgtaaccatgcagaatgaatacctaaactattAACCTGTTAActagttgtttctgttttaaccttaaccactcagaatgaatacctaaactattAACCTGTTAACTAGTTGTTCCTGttttaaccttaaccactcagaattaaTACCTAAACTATTAACCTGTTAActagttgtttctgttttaaccttaaccactcagaattaaTACCTAAACTATTAACCTGTTAACTAGTTGTTCCTGttttaaccttaaccactcagaattaaTACCTAAACTATTAACCTGTTAActagttgtttctgttttaatcctgtaaccatgcagaattaatgCGTCAAAAATAGAAGGGTAACTATCTTGTTGCACAAACACaggcacacgcgcgcacacacactctccttctctgtcactgctgcctctctctgactgtgtgtctgagcCCCCCAGAGAAGGAGCCAGCGTGCCCAATCCAGGCCCTGGAACTAGGTCAGCCTCCAGAACAGTGTacactgctcctctcctctctctatccctctatcctctcctctcctctatccctctatcctctcctctctctatcctctcatctcctttatccctctatcctctcatctcctttaTCCATCTCTTCTTGTCTCTTTACTTctgcctgtcctctcctcctccattcaccgtctctcttctcctctatctatcctcagtccatccatctcttctcttttatcttctctgctctcttctatctctctctc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1946148 True 2518 lncRNA 0.46 2 1098247 1103848

Neighbor

gene id symbol gene type direction distance location
LOC110516566 LOC106576623 coding downstream 246481 824590 ~ 851766 (-)
cacna2d4a cacna2d4 coding downstream 312873 585735 ~ 785374 (-)
LOC118942823 NA coding downstream 515230 581374 ~ 597675 (-)
LOC110517722 LOC106590767 coding downstream 749262 345973 ~ 348985 (-)
LOC118942822 NA coding downstream 832612 261114 ~ 265635 (-)
LOC110511372 LOC106592130 coding upstream 215373 1319221 ~ 1348497 (-)
LOC110527029 LOC106592131 coding upstream 244751 1348599 ~ 1357031 (-)
LOC118942825 frs2 coding upstream 259381 1363229 ~ 1446417 (-)
LOC110499705 LOC106609801 coding upstream 344956 1448804 ~ 1453886 (-)
LOC110499704 cpsf6 coding upstream 350718 1454566 ~ 1513068 (-)
G1700610 NA non-coding downstream 8026 1089848 ~ 1090221 (-)
G1700569 NA non-coding downstream 63847 1033682 ~ 1034400 (-)
G1700584 NA non-coding downstream 74096 1021916 ~ 1024151 (-)
G1700583 NA non-coding downstream 76516 1019670 ~ 1021731 (-)
G1700582 NA non-coding downstream 79254 1017329 ~ 1018993 (-)
G1700621 NA non-coding upstream 20726 1124574 ~ 1137671 (-)
G1700658 NA non-coding upstream 101297 1205145 ~ 1205665 (-)
G1700697 NA non-coding upstream 177237 1281085 ~ 1283069 (-)
G1700712 NA non-coding upstream 209108 1312956 ~ 1315950 (-)
G1700726 NA non-coding upstream 253716 1357564 ~ 1359669 (-)
G1700312 NA other downstream 743738 352487 ~ 354509 (-)
LOC110512520 LOC106609724 other upstream 1018681 2113042 ~ 2128710 (-)
G1701041 NA other upstream 1084585 2188433 ~ 2189666 (-)
G1701824 NA other upstream 1468826 2572603 ~ 2577051 (-)

Expression


Co-expression Network