G1699548


Basic Information

Item Value
gene id G1699548
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 1306199 ~ 1307614 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1944757
ATCCTACCACTTTACCATCCTACCACGTGACCATCCTACCACGTTACCATCCTACCACGTTACCATCCTACCACGTTACCATACTACCACGTTACCATTCTACTACGTTACCATACTACCACGTTACCATCCTACCACATTATCATTCTACCACGTTTCCATCCTACCACGTTACCATCCTACCACATTACCATCCTACCACGTTATCATTCTACCACATTATCATTCTACCACGTTACCATCCTACCACGTTACCATCCTACCGCGTTATCATTCTACCACGTTATCATTCTACCATGTTACCATCCTACCACGTTACCATCCTACCACGTTACCATTCCACCACGTTATCATCCTACCACGTTACCATCATACCATTTTATCATCCTACCATGTTACCATCCTACCATTTTAATATCCTACCATGTTACCATCCTACCGCATTACCATCCTACCACACTACATCCTACCACATTACCATCCTACCATTTTAATATCCTACCATGTTAGCATCCTGCCGCGTTACCATCCTACCATTTAATATCCTACCATGTTACCATCCTACCATGTTACCATCCTACCACATTACCATCCTACCATGTTACCATCCTACCATGTTACCATCCTACCGCGTTACCATTCTACCGCGTTACATCCTACCACGTTACCATCCTACCGCGTTACCAGCCTGTTAAAGTTCCCATGTTGTATAGCTAGCTGCAGGGTAACTAAGCTCCTCTCTGAAGGCTCACACTTATAGCCATATAGCCTGATGAATGTTTACTTGAAACGATGACACCCCACTCCAAAATAATGCAACGCTTGTGAACTTAGAGACTTCCACTCACCCACCCCTTCCCCCCACCATCCTATTTCTACAGGATAGATTATTGTTGTTTCTGTACATCCCCAACAAACTGTGCCATACACATATccatatacatacagtacttcAAGAATACTTCAAGAGTACTTCAAGAGTACTTCATAGTACTTTTGACTTTGGGAGGCCTGAGACC
>TU1944758
ATCCTACCACTTTACCATCCTACCACGTGACCATCCTACCACGTTACCATCCTACCACGTTACCATCCTACCACGTTACCATACTACCACGTTACCATTCTACTACGTTACCATACTACCACGTTACCATCCTACCACGTTACCATCCTACCACATTACCATCCTACCACGTTATCATTCTACCACATTATCATTCTACCACGTTACCATCCTACCACGTTACCATCCTACCGCGTTATCATTCTACCACGTTATCATTCTACCATGTTACCATCCTACCACGTTACCATCCTACCACGTTACCATTCCACCACGTTATCATCCTACCACGTTACCATCATACCTCATTACCATCCTACCGCGTTACCATTCTACCACGTTACCATCCTACCACGTTACCATCATACCATTTTATCATCCTACCATGTTACCATCCTACCATTTTAATATCCTACCATGTTACCATCCTACCGCATTACCATCCTACCACACTACATCCTACCACATTACCATCCTACCACGTTACCATCCTACCGCGTTACCAGCCTGTTAAAGTTCCCATGTTGTATAGCTAGCTGCAGGGTAACTAAGCTCCTCTCTGAAGGCTCACACTTATAGCCATATAGCCTGATGAATGTTTACTTGAAACGATGACACCCCACTCCAAAATAATGCAACGCTTGTGAACTTAGAGACTTCCACTCACCCACCCCTTCCCCCCACCATCCTATTTCTACAGGATAGATTATTGTTGTTTCTGTACATCCCCAACAAACTGTGCCATACACATATccatatacatacagtacttcAAGAATACTTCAAGAGTACTTCAAGAGTACTTCATAGTACTTTTGACTTTGGGAGGCCTGAGACCCATCGTTTGAGGCTGTGAGTTTGTGAGAGAATGCCAGAGGCTGGTACAATCCCTGTGAGGAGTTGGTACATCAGTCATGACGTCCGTGATGTTGGTTGGACACTAACAGAATATGTTGGTACAGTGAGTGGGTGCTTGCAGTCCACAAGATATGCAAAAACAATGCACTAACTTTAAACAACAAGATCCATATTATTaattataaaacatttttaaaaaatacagttgtaCAAAAGAAGTGATAAAGAGAAGAAATTGTATTATAGATATAatatatttatgtttttgtttttgttgggtTACAGCGTCATTTTAAATTGAGGAAGAAACCTG
>TU1944759
ATCCTACCACTTTACCATCCTACCACGTGACCATCCTACCACGTTACCATCCTACCACGTTACCATCCTACCACGTTACCATACTACCACGTTACCATTCTACTACGTTACCATACTACCACGTTACCATCCTACCACGTTACCATCCTACCACATTACCATCCTACCACGTTATCATTCTACCACATTATCATTCTACCACGTTACCATCCTACCACGTTACCATCCTACCGCGTTATCATTCTACCACGTTATCATTCTACCATGTTACCATCCTACCACGTTACCATCCTACCACGTTACCATTCCACCACGTTATCATCCTACCACGTTACCATCATACCTCATTACCATCCTACCGCGTTACCATTCTACCACGTTACCATCCTACCACGTTACCATCATACCATTTTATCATCCTACCATGTTACCATCCTACCATTTTAATATCCTACCATGTTACCATCCTACCGCATTACCATCCTACCACACTACATCCTACCACATTACCATCCTACCATTTTAATATCCTACCATGTTAGCATCCTGCCGCGTTACCATCCTACCATTTAATATCCTACCATGTTACCATCCTACCATGTTACCATCCTACCACATTACCATCCTACCATGTTACCATCCTACCATGTTACCATCCTACCGCGTTACCATTCTACCGCGTTACATCCTACCACGTTACCATCCTACCGCGTTACCAGCCTGTTAAAGTTCCCATGTTGTATAGCTAGCTGCAGGGTAACTAAGCTCCTCTCTGAAGGCTCACACTTATAGCCATATAGCCTGATGAATGTTTACTTGAAACGATGACACCCCACTCCAAAATAATGCAACGCTTGTGAACTTAGAGACTTCCACTCACCCACCCCTTCCCCCCACCATCCTATTTCTACAGGATAGATTATTGTTGTTTCTGTACATCCCCAACAAACTGTGCCATACACATATccatatacatacagtacttcAAGAATACTTCAAGAGTACTTCAAGAGTACTTCATAGTACTTTTGACTTTGGGAGGCCTGAGACC

Function

NR:

description
PREDICTED: endo-1,4-beta-xylanase B-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1944757 False 1019 lncRNA 0.44 2 1306199 1307281
TU1944758 False 1210 lncRNA 0.41 3 1306199 1307614
TU1944759 True 1051 lncRNA 0.44 2 1306199 1307281

Neighbor

gene id symbol gene type direction distance location
LOC110518351 LOC103459268 coding upstream 296 1156714 ~ 1305903 (+)
LOC118942824 LOC106609805 coding upstream 306635 853031 ~ 999564 (+)
LOC118936449 LOC106575063 coding upstream 596199 647909 ~ 710000 (+)
LOC101268929 LOC101268929 coding upstream 739877 479755 ~ 566322 (+)
LOC118942821 wnt5b coding upstream 841625 225129 ~ 464574 (+)
LOC110499702 tcpb coding downstream 169266 1476880 ~ 1487165 (+)
LOC118943024 NA coding downstream 176413 1484027 ~ 1484168 (+)
LOC110499710 LOC106596118 coding downstream 182079 1489693 ~ 1500056 (+)
LOC110517600 rab3ip coding downstream 209748 1517362 ~ 1600082 (+)
LOC110500915 LOC106576535 coding downstream 299800 1607414 ~ 1669220 (+)
G1699693 NA non-coding upstream 99368 1205088 ~ 1206831 (+)
G1699659 NA non-coding upstream 182126 1101926 ~ 1124073 (+)
G1699652 NA non-coding upstream 218582 1087063 ~ 1087617 (+)
G1699643 NA non-coding upstream 237556 1064676 ~ 1068643 (+)
G1699547 NA non-coding downstream 198 1307812 ~ 1308744 (+)
G1699553 NA non-coding downstream 1215 1308829 ~ 1309150 (+)
G1699552 NA non-coding downstream 3426 1311040 ~ 1311740 (+)
G1699546 NA non-coding downstream 5165 1312779 ~ 1384859 (+)
G1699720 NA non-coding downstream 13740 1321354 ~ 1321902 (+)
G1699655 NA other upstream 205978 1094149 ~ 1100221 (+)
G1699629 NA other upstream 220173 1082691 ~ 1086026 (+)
LOC118942820 LOC108442871 other upstream 1164950 60262 ~ 194218 (+)
G1699724 LOC106592130 other downstream 34885 1342499 ~ 1343138 (+)
G1699804 NA other downstream 230342 1537956 ~ 1538880 (+)
LOC110499743 cnot2 other downstream 450855 1688942 ~ 1769720 (+)
G1699934 NA other downstream 560080 1867694 ~ 1869554 (+)

Expression


Co-expression Network