G1700712


Basic Information

Item Value
gene id G1700712
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 1312956 ~ 1315950 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1946282
CTGTTGGTGAGACCATGCAGACTTGTCATTCAAAGGAGAAAAGGGGGCTCGGATTTGGGCAAGTCCACTCAACAACTCCCCCAAAACTAGTCGAACCCCTTACATGAAGTGAGTGACTGTCTCTGAGCATGAGGAGATTGATACAAAACAAGATGGCTGCCTCCAAAGCTACCATAATGCACAATACACATTCTAGTTCATTTTAATGACCATAAATAGTGCTGTTCTTCTTAAAATACTACATTTAACAGTAGTGCCACTACTAATATCACAAAAAAATTACTTTTGTTGTTTCTCGTGAGTAGTTCTTTCACATATAAACGCAATAAGGACAGACGACTTTGCCAAAAAGTGGTCTATCCTTCCACTTCCACCAGTCAGTCTTCTGATTCTGTGCATGATTGACTAAATCACGATTTAGGGCATTACTGAAGTATTTAAATGTATTACAGACTTGTTTAAACCTGATGGGTACAACGTTCTACTGCTGCCTTAAAGTGAGACGCGGACCAATAAAACAACGTCTTTAACTCAACAttaaccaaccccccccccccccccccacccaaactATTTATGACTTTGATAGTCACACAAACCCCTCTTCATCACCAATAGTCAACTACTCATCCTCGGTGTTCTGTTATCCATACCAGGTAAACAATAATCTCTCTCCGACGTGGCTTTAGGAAGGTCAAATCAAACCAGAAAAACGACTTATGTTGGAAAAGAAGAACAACAGTTAAACCTCAATAAAGTGATCTTATAATATGTCTGAATATTTTGTATCAAAATACTGTGTTTGCTCCATGTGGAATCTGGAACCGTACTGTGGAATGCTACAGTATAACGGTGCAATATTTATCTTAACCGACCTggaagaaacagagggagagttCATGATTCAACCGACTGACACCTACTCACTGGCCAGTAAGGCCTCTTGAAAACGAGTCCTAGTCTGATTCAACCAACTGACACCTGCTCACTGGCCAGTAAGGCCTCTTGAAAACGAGTCCTAGTCTGATTCAACTAACTGACACCTGCTCACTGGCCAGTAAAGGCCTCTTGAAAACGAGTCCTAGTCTGCTTCAACCAACTGACACCTGCTCACTGGCCAGTAAGGCCTCTTGAAAACGAGTCCTAGTCTGATTCAACCAACTGACACCTGCTCACTAGCCAGTAAAGGCCTCTTGAAAACGAGTCCTAGTCTGATTCAACCAACTGACACCTGCTCACTGGCCAGTAAGGCCTCTTGAAAACGAGTCCTAGTCTGATTCAACCAACTGACACCTGCTCACTGGCCAGTAAGGCCTCTTGAAAACGAGTCCTAGTCTGATTCAACCAACTGACACCTGCTCACTGGCCAGTAAGGCCTCTTGAAAACGAATCCTAGTCTGCTTCAACCAACTGACACCTGCTCACTGGCCAGTAAAGGCCTCTTGAAAACGAGTCCTAGTCTGattctcaaatggaaccctattccctacataagggcactactttagaccagtggcCTTcagtggtcaaacgtagtgcactataaagggaatgggtGCTATTTCAGACAGTCATATTCATGCTATCTTTTAAATCTAGACATAACTTCTTAAAACTCTTTCCTTTCAACGCCTCTGTGTATATTCTTAGAAAAAAATGGTTCCACAAGGGGTTAATTCAGCTGACCCCATaggagaactctttttggttcgaGACAGAACCCTTTTtttggttccatttagaaccctccattgaaagggttctacgtggaacccaaaagggttctcctatggagacagccaaataaccctttaagGTTCCAGACAGAACCCTTTTtttggttccatttagaaccctccattgaaagggttctacgtggaacccaaaatggttctcctatggagacagccgaataaccctttaaTTAAGGTTCTAGACAGCGCCTTTTATCTTGTAAGAGCAGTCATAGTCAAACTAGATAGTGGTGTATGTGCAAAATAGTGATCTCCTCTAGAAATGTTGTCTCCGACACGTCTGCATAATAATGATCATTATAATCAATAGTTTTAATATACTAACAGTCTTTTAAGAAGAGGACTTTAGAAGAAAGGTGCTCCTGATTTTGCtactcttggggggggggggggggggggggggggtttgttgaCGTCAAACTAATGTAGGGTTGTTGTTCTGGGTTAGTTAAGTCCTGTCTATCAAGGTTAATATGGAAGTTATAACCTATGCAGCTCAAAGTGGACGCTGTCAGTCGAGAGTCAGAGGTCAAAGGTGAGAGGTCAAAACAGCATGCTTCCATTCTACTAGTGGAGCATGCCCTTTGACCTGTCCCGTGCCGtgtggatggacggacggacggacgcacAAGCAGCAAAGGACCCACATTCAACACGTTTCTAATGGAGCCTTGTGTTGCTAGCATGACGTGGGATCAGGGGGAAACATTACATCTTCAAGAGGGGCGAAGCGTTTTGATTCAAATGTAAATCCTCAACAAGACGGTTGGTTTCCTCTCTGGTAACCGCGCCCAGACGTTGTGAGTTGTCTCAGCAGTATGAGCTCTTTCTATACTGTAGCTACCTCTAGCATCTTAAATGGTTTCTATTCAGCCTACAACTCGCTACTCCAGTTACCCTCCCTAAAAAATATGCTCTCCACAATATAATGAAGTACTATAGATATATGTGTCATTCAGGATATATAAAATAGTGTTTTTAATTCATAACCAGTTTTGTGATTTCTTCCCCCATTACATAACGTATAATGGTTGTACAACAAAACTGAAAAAGAGATGTtctttcatttatttttaaaagGAAACGGATGAGAGATGTTGTTTAATTAGTAAACGCTAACTAGATCTGGACT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1946282 True 2886 lncRNA 0.43 2 1312956 1315950

Neighbor

gene id symbol gene type direction distance location
LOC110516566 LOC106576623 coding downstream 461190 824590 ~ 851766 (-)
cacna2d4a cacna2d4 coding downstream 527582 585735 ~ 785374 (-)
LOC118942823 NA coding downstream 729939 581374 ~ 597675 (-)
LOC110517722 LOC106590767 coding downstream 963971 345973 ~ 348985 (-)
LOC118942822 NA coding downstream 1047321 261114 ~ 265635 (-)
LOC110511372 LOC106592130 coding upstream 3271 1319221 ~ 1348497 (-)
LOC110527029 LOC106592131 coding upstream 32649 1348599 ~ 1357031 (-)
LOC118942825 frs2 coding upstream 47279 1363229 ~ 1446417 (-)
LOC110499705 LOC106609801 coding upstream 132854 1448804 ~ 1453886 (-)
LOC110499704 cpsf6 coding upstream 138616 1454566 ~ 1513068 (-)
G1700697 NA non-coding downstream 29887 1281085 ~ 1283069 (-)
G1700658 NA non-coding downstream 107291 1205145 ~ 1205665 (-)
G1700621 NA non-coding downstream 175285 1124574 ~ 1137671 (-)
G1700612 NA non-coding downstream 209108 1098247 ~ 1103848 (-)
G1700610 NA non-coding downstream 222735 1089848 ~ 1090221 (-)
G1700726 NA non-coding upstream 41614 1357564 ~ 1359669 (-)
G1700701 LOC106593264 non-coding upstream 100718 1416668 ~ 1485260 (-)
G1700710 NA non-coding upstream 126247 1442197 ~ 1500408 (-)
G1700702 NA non-coding upstream 170091 1486041 ~ 1487164 (-)
G1700312 NA other downstream 958447 352487 ~ 354509 (-)
LOC110512520 LOC106609724 other upstream 806579 2113042 ~ 2128710 (-)
G1701041 NA other upstream 872483 2188433 ~ 2189666 (-)
G1701824 NA other upstream 1256724 2572603 ~ 2577051 (-)

Expression


Co-expression Network