G1699777


Basic Information

Item Value
gene id G1699777
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 1473236 ~ 1473963 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1945085
GCGGGGGCCCTCCGGGTCCGATAGGCCCAGGGAAGCGGTCTCCTCCAGGGCCAGGAGGCCCGGGGAAGCGGCCTCGGCCCCTACCCATGCCCATGGGGAAGCCACCGCGGGGGCCCATGGTGGGGGGTCCCGCCTTCCCATCTCCGGACATCTGCCCACCCGATGTACCTGGGCTTTTCCGAGACTGCATCTCGAACTGGCTGAGGGACTGTTTGTTGCAGGGGGTAACAATGGGGTTCTGTCCGTGGAGCTCCCGTTTAGCCAGCAGGTCCAGTAGCTTCCTAGAGGACGTGTCTGAGCCCACACACACCAGGGCAAACCTAATGGGACACACCAGGGCATAACGGGACCATGTCactatctctttcttt

Function

NR:

description
cleavage and polyadenylation specificity factor subunit 6-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1945085 True 371 lncRNA 0.63 2 1473236 1473963

Neighbor

gene id symbol gene type direction distance location
LOC110518351 LOC103459268 coding upstream 167333 1156714 ~ 1305903 (+)
LOC118942824 LOC106609805 coding upstream 473672 853031 ~ 999564 (+)
LOC118936449 LOC106575063 coding upstream 763236 647909 ~ 710000 (+)
LOC101268929 LOC101268929 coding upstream 906914 479755 ~ 566322 (+)
LOC118942821 wnt5b coding upstream 1008662 225129 ~ 464574 (+)
LOC110499702 tcpb coding downstream 2917 1476880 ~ 1487165 (+)
LOC118943024 NA coding downstream 10064 1484027 ~ 1484168 (+)
LOC110499710 LOC106596118 coding downstream 15730 1489693 ~ 1500056 (+)
LOC110517600 rab3ip coding downstream 43399 1517362 ~ 1600082 (+)
LOC110500915 LOC106576535 coding downstream 133451 1607414 ~ 1669220 (+)
G1699773 NA non-coding upstream 21875 1450479 ~ 1451361 (+)
G1699761 NA non-coding upstream 45044 1427168 ~ 1428192 (+)
G1699744 NA non-coding upstream 87045 1385186 ~ 1386191 (+)
G1699736 NA non-coding upstream 107615 1364978 ~ 1365621 (+)
G1699732 NA non-coding upstream 112198 1360420 ~ 1361038 (+)
G1699800 NA non-coding downstream 58676 1532639 ~ 1534218 (+)
G1699812 NA non-coding downstream 86169 1560132 ~ 1562192 (+)
G1699819 NA non-coding downstream 97668 1571631 ~ 1572818 (+)
G1699826 NA non-coding downstream 118427 1592390 ~ 1592616 (+)
G1699827 NA non-coding downstream 119166 1593129 ~ 1593328 (+)
G1699724 LOC106592130 other upstream 130098 1342499 ~ 1343138 (+)
G1699655 NA other upstream 373015 1094149 ~ 1100221 (+)
G1699629 NA other upstream 387210 1082691 ~ 1086026 (+)
LOC118942820 LOC108442871 other upstream 1331987 60262 ~ 194218 (+)
G1699804 NA other downstream 63993 1537956 ~ 1538880 (+)
LOC110499743 cnot2 other downstream 284506 1688942 ~ 1769720 (+)
G1699934 NA other downstream 393731 1867694 ~ 1869554 (+)
LOC110519348 tbc1d15 other downstream 1165377 2588642 ~ 2667278 (+)

Expression


Co-expression Network