Gene
RNA
| Item | Value |
|---|---|
| gene id | G1700830 |
| gene name | NA |
| gene type | non-coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048585.1 |
| NCBI id | CM023239.2 |
| chromosome length | 64935962 |
| location | 1688999 ~ 1717124 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| CCR4-NOT transcription complex subunit 2-like, partial |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU1946430 | True | 314 | lncRNA | 0.47 | 2 | 1688999 | 1717124 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110511332 | LOC106576651 | coding | downstream | 172815 | 1500431 ~ 1516184 (-) |
| LOC110499704 | cpsf6 | coding | downstream | 212482 | 1454566 ~ 1513068 (-) |
| LOC110499705 | LOC106609801 | coding | downstream | 235113 | 1448804 ~ 1453886 (-) |
| LOC118942825 | frs2 | coding | downstream | 242582 | 1363229 ~ 1446417 (-) |
| LOC110527029 | LOC106592131 | coding | downstream | 331968 | 1348599 ~ 1357031 (-) |
| ptprbl | LOC106609809 | coding | upstream | 146850 | 1863974 ~ 1985304 (-) |
| LOC118942826 | NA | coding | upstream | 268786 | 1985910 ~ 1990032 (-) |
| LOC110499711 | ptprr | coding | upstream | 274353 | 1991477 ~ 2085804 (-) |
| LOC110512520 | LOC106609724 | coding | upstream | 395918 | 2113042 ~ 2128710 (-) |
| LOC110499714 | LOC106609803 | coding | upstream | 411909 | 2129033 ~ 2138088 (-) |
| G1700829 | NA | non-coding | downstream | 6621 | 1681587 ~ 1682378 (-) |
| G1700827 | NA | non-coding | downstream | 20400 | 1665657 ~ 1668599 (-) |
| G1700802 | NA | non-coding | downstream | 41087 | 1597422 ~ 1647912 (-) |
| G1700818 | NA | non-coding | downstream | 51940 | 1636431 ~ 1637059 (-) |
| G1700800 | NA | non-coding | downstream | 95545 | 1593220 ~ 1593454 (-) |
| G1700844 | LOC106599552 | non-coding | upstream | 1642 | 1718766 ~ 1729289 (-) |
| G1700850 | NA | non-coding | upstream | 10073 | 1727197 ~ 1727605 (-) |
| G1700852 | NA | non-coding | upstream | 23160 | 1740284 ~ 1740998 (-) |
| G1700857 | NA | non-coding | upstream | 29884 | 1747008 ~ 1747573 (-) |
| G1700859 | NA | non-coding | upstream | 35926 | 1753050 ~ 1753589 (-) |
| LOC110511372 | LOC106592130 | other | downstream | 365636 | 1319221 ~ 1348497 (-) |
| G1700312 | NA | other | downstream | 1334490 | 352487 ~ 354509 (-) |
| G1701041 | NA | other | upstream | 471309 | 2188433 ~ 2189666 (-) |
| G1701824 | NA | other | upstream | 855550 | 2572603 ~ 2577051 (-) |
| G1701930 | NA | other | upstream | 1066818 | 2783942 ~ 2829582 (-) |
| G1702117 | NA | other | upstream | 1511878 | 3229002 ~ 3230041 (-) |
