G1700844 (LOC106599552)


Basic Information

Item Value
gene id G1700844
gene name LOC106599552
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 1718766 ~ 1729289 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1946449
TTGATGGTGAAAGGTTGCCGTGACTGCTGTTGCTTGGGCATGCAGATGATGCTGGGAGAGGCACGGTTGGGGCTGCCCAGGCCCGAGCTGCCCAGGCTGTTGGTCCTGCCCCCACTAGGCATGCCCCCCACCATGACCTCCTGGCGCCCCACCTGCTGAGGGGTGTTCATCATGTTCCGCGTGTTCATGGGCAGGATGCCcCTGCTTGGCGAGGGAGGAGTATGGAGGGACATTGTGGGGGCGACTCCAGAGGCAGGGGTAACGTGGCTCGGTAGCTGGTTGCCCTGTGGTAAGCTGCGATTCAACTGAGCCGTGTTGCTCATGCCCCTCATAGGGAACCCTAGGGCACTTTGTGGCCCGTATAAACTGGCACCAAGCTGCGACAATTGACCTGACGACGATGGGGATGGAGATGCCAGCATGTCTTTGTCTGATGGATGAGGGAACATGGATGTCTGGCCATAATACACAGTGTCGTCGGGGTAGTCACTCTCCACCCCCTCTACAAACCTCTTTCTGGTAGCACTAAACATGCTGTTAGTCACCTgtaagaggggaggaaaggaggaaagcGTTTAGGACACAGGTCACCAACTGGTCGATCGCCATCcacaaggcattcctagtcgatcaccaaacatttct

Function

NR:

description
CCR4-NOT transcription complex subunit 2-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1946449 True 645 lncRNA 0.57 4 1718766 1729289

Neighbor

gene id symbol gene type direction distance location
LOC110511332 LOC106576651 coding downstream 202582 1500431 ~ 1516184 (-)
LOC110499704 cpsf6 coding downstream 242249 1454566 ~ 1513068 (-)
LOC110499705 LOC106609801 coding downstream 264880 1448804 ~ 1453886 (-)
LOC118942825 frs2 coding downstream 272349 1363229 ~ 1446417 (-)
LOC110527029 LOC106592131 coding downstream 361735 1348599 ~ 1357031 (-)
ptprbl LOC106609809 coding upstream 134685 1863974 ~ 1985304 (-)
LOC118942826 NA coding upstream 256621 1985910 ~ 1990032 (-)
LOC110499711 ptprr coding upstream 262188 1991477 ~ 2085804 (-)
LOC110512520 LOC106609724 coding upstream 383753 2113042 ~ 2128710 (-)
LOC110499714 LOC106609803 coding upstream 399744 2129033 ~ 2138088 (-)
G1700830 NA non-coding downstream 1642 1688999 ~ 1717124 (-)
G1700829 NA non-coding downstream 36388 1681587 ~ 1682378 (-)
G1700827 NA non-coding downstream 50167 1665657 ~ 1668599 (-)
G1700802 NA non-coding downstream 70854 1597422 ~ 1647912 (-)
G1700818 NA non-coding downstream 81707 1636431 ~ 1637059 (-)
G1700852 NA non-coding upstream 10995 1740284 ~ 1740998 (-)
G1700857 NA non-coding upstream 17719 1747008 ~ 1747573 (-)
G1700859 NA non-coding upstream 23761 1753050 ~ 1753589 (-)
G1700861 NA non-coding upstream 27198 1756487 ~ 1756785 (-)
G1700864 NA non-coding upstream 40104 1769393 ~ 1769835 (-)
LOC110511372 LOC106592130 other downstream 395403 1319221 ~ 1348497 (-)
G1700312 NA other downstream 1364257 352487 ~ 354509 (-)
G1701041 NA other upstream 459144 2188433 ~ 2189666 (-)
G1701824 NA other upstream 843385 2572603 ~ 2577051 (-)
G1701930 NA other upstream 1054653 2783942 ~ 2829582 (-)
G1702117 NA other upstream 1499713 3229002 ~ 3230041 (-)

Expression


Co-expression Network