G1700901


Basic Information

Item Value
gene id G1700901
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 1852003 ~ 1855281 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1946524
AAACATTCTCTTTCCAACACAAAATATATTAGTTTAGTACTACTGTTACAGCTCCTATTGTAAGAGGACATAACCTCCCCTGGAGCTGCCTCTTACTGCAATCACATGTTCAGCATATGGCTTTATGTATGAAATATCATTCCTCTTTTAGCCAAGGACAACAATGTCTGAGCTACTTCTGTTGTAGAAAATGCACAAGTGAATACTCCTGTACGTCCGATTAACGCAGTCGAGAGCAAACCTTTTCTTGGAGCAGGGTAGGTAGGTGTAACGATTTGTAGTCAGATCACATTCTCCTCTTATCCAATCGGATGGAAAACATTAACTGGATGTACTACTAACTGTTCAAACCAATCGGAGAGCGGTAACACAAACGGACGACAAACTATTCAAACCAATCGGAGAGCGGTAACACAAACGGACGACAAACTATTCAAACCAATCGGAGAGCGGTAACACAAACGGACGACAAACTATTCAAACCAATCGGAGAGCGGTAACACAAACGGACGACAAACTATTCAAACCAATCGGAGAGCGGTAACACAAACGGACGACAAACTATTCAAACCAATCGGAGAGCGGTAACACAAACGGACGACAAACTATTCAAACCAATCGGAGAGTGGTAACACAAACGGACGACAAACTATTCAAACCAATCGGAGAGCGGTAACACAAACGGACGACAAACTATTCAAACCAATCGGAGAGCGGTAACACATACGGACTACAAACTATTCAAACCAATCAGAGAGCGGTAACACAAACGGACGACAAACTATTCAAACCAATCGGAGAGCGGTAACACATACGGACGACAAACTATTCAAACCAATCGAAGAGCGGTAACTCATACGGACGACTAACTATTCAAACCAATCGGAGAGCGGTAACACAAACGGACGACAAACTATTCAAACCAATCGGAGAGCGGTAACACAAATGGACGACAAACTATTCAAACCAATCGGAGAGCGGTAACACATGCGGACGACAAACTATTCAAACCAATCGGAGAGCGGTAACTCATACGGACGACAAACTATTCAAAACGATGCAAAAGTCTGCTACTGTGGTAAGAAAACACATTCAATTTGCATCGTGAAAAAAACTAAAACCATTAACTGACAGAAGGTAAGACAGAAGACAGACTGCAGAGGAAGTTGCTACAGTCAAGGCATCTGCACATCTATCCAACCACAGACAAACTACCTATCCCAGGTTTTGTCCCGAACCCAGACCAACTGTCCGTGGCCCAGTCTACATATTGAACCCAGACCAACTGTCCATGGCCCAGTCTACATATTGAACCCAGACCAACTGTCTGTGGCCCAGTCTACATATTTAACCCAGACCAACTGTCCGTGGCCCAGTCTACATATTGAACCCAGACCAACTGTCCCTGGCCCAGTCTACATATTGAACCCAGACCAACTGTCCATGGCCCAGTCTACATATTGAACCCAGACCAACTGTCCCTGGCCCAGTCTACATATTGAACCCAGACCAACTGTCCATGGCCCAGTCTACATATTTAACCCAGACCAACTGTCCGTGGCCCAGTCTACATATTGAACCCAGACCAACTGTCCGTGGCCCAGTCTACATATTGAACCCAGACCAACTGTCCATGGCCCAGTCTACATATTGAACCCAGACCAACTGTCCGTGGCCCAGTCTACATATTGAACCCAGACCAGCTGTCCGTGGCCCAGTCTACATATTGAACCCAGACCAGCTGTCCGTGGCCCAGTCTACATATTGAACCCAGACCAGCTGTCCGTGGCCCAGTCTACATATTGAATCGGGACCAAATAGGTTCAAACATGTCCTGCGGCAACCAACTGAAAATGAACAACAGACATATTCCGTCCATGGCGGTTGGGTTGGCTGTAGTTGGACAGATGCCTTAAAGAAGCCTTGTTAGAAACAGGTTTAGTAAAAGGCAGGtggtacagagaggagagagagggggaaccgGATTAAAACAAACCGTAATATGCCTTTAAAAGTAATATACACATTGTTGCGATTTGTTTAAATCGTGGCCCGGGGTGTTAAAGAACAGTAACAGTGAGATAGGCATTTAAACACTTCCTAATACCACCTAGAGAAGAAGACCGTACATCATGCTGGGGGTGATCAGACCAAGGTCTGCTACTGGCTCTGTCGTCCCAGAGATTAGAAGGACTCTCCCAGAATTCCTTTCACCGCATTCTCTCTGAACAAAGCACTGGCATTTTGTGTAACTGGTGTTGAAGATTCTTCTCAGGTGGTCCTGGCCGGGTAGCCCTCACGATCCCTCCTTTCATACGACCAGGGGTTTGTAATGAAGAGTCTATTTAAAGAGAGTTCAAAGGTAACAGACATTTCCTGTTTGTAAGTCAGTGAACTCTGAACTTTGAGACCGAGCTCGGCTAGTGAAGTAAACACAAATAACATTACAatcagcacagagacacagaggctcAACACGTAACACAGACCTGTCCAAAACATGACCAGTGACAGAAAGCGGCATTGTCCTTTTGGGATTTTTGCTTAGTCATAGACATAACCAACGCACTGTAATACACAGAGCATTAGAAAAGGCCCTCACCAGCTGAGAGTTGAACTGACAAAATGGCTCTTACACAAGTagacaaacacacatagacaaGACAGACAAGCATTTCTTGTGCATGAGCCTCGAGTCCAGTCCAGCGGAATGAGAGTGTTCAGAACAGTCATAATAGGGAAGTTCAAACATTCCCCGCTTCTATGAGGTCCTCATCACACAACAACCACCACTGAGACCACAGTCATCATCAATCTATCAATCCATCCATCTAGTGTTCCTGTTCCCGGTCTCTGCGTCGGACAGGGACAGCGAACATCGGCAGGGTCCGGAAGGAGGCGGTGTTGGTGTTGGGCGGCGTCTTGCCCTGCTCTGAGTTGCCTGCCGGCTCGTACGAGCACTTCCTCTTTTGGATGGCCTCGGCGCGCACGGCCAGGCTGCGGGCGCACACGGTGAGAAGGACGATGAGGGTACCCACCAGCAGGCTCACCATGGGCCACAGGAC
>TU1946525
AAACATTCTCTTTCCAACACAAAATATATTAGTTTAGTACTACTGTTACAGCTCCTATTGTAAGAGGACATAACCTCCCCTGGAGCTGCCTCTTACTGCAATCACATGTTCAGCATATGGCTTTATGTATGAAATATCATTCCTCTTTTAGCCAAGGACAACAATGTCTGAGCTACTTCTGTTGTAGAAAATGCACAAGTGAATACTCCTGTACGTCCGATTAACGCAGTCGAGAGCAAACCTTTTCTTGGAGCAGGGTAGGTAGGTGTAACGATTTGTAGTCAGATCACATTCTCCTCTTATCCAATCGGATGGAAAACATTAACTGGATGTACTACTAACTGTTCAAACCAATCGGAGAGCGGTAACACAAACGGACGACAAACTATTCAAACCAATCGGAGAGCGGTAACACAAACGGACGACAAACTATTCAAACCAATCGGAGAGCGGTAACACAAACGGACGACAAACTATTCAAACCAATCGGAGAGCGGTAACACAAACGGACGACAAACTATTCAAACCAATCGGAGAGCGGTAACACAAACGGACGACAAACTATTCAAACCAATCGGAGAGCGGTAACACAAACGGACGACAAACTATTCAAACCAATCGGAGAGTGGTAACACAAACGGACGACAAACTATTCAAACCAATCGGAGAGCGGTAACACAAACGGACGACAAACTATTCAAACCAATCGGAGAGCGGTAACACATACGGACTACAAACTATTCAAACCAATCAGAGAGCGGTAACACAAACGGACGACAAACTATTCAAACCAATCGGAGAGCGGTAACACATACGGACGACAAACTATTCAAACCAATCGAAGAGCGGTAACTCATACGGACGACTAACTATTCAAACCAATCGGAGAGCAGTAACTCATACGGACGACTAACTATTCAAACCAATCGGAGAGCGGTAACACAAACGGACGACAAACTATTCAAACCAATCGGAGAGCGGTAACTCATACGGACAACAAACTATTCAAACCAATTGGTGAGCGGTAACTCATACGGACGACAAACTATTCAAAACGATGCAAAAGTCTGCTACTGTGGTAAGAAAACACATTCAATTTGCATCGTGAAAAAAACTAAAACCATTAACTGACAGAAGGTAAGACAGAAGACAGACTGCAGAGGAAGTTGCTACAGTCAAGGCATCTGCACATCTATCCAACCACAGACAAACTACCTATCCCAGGTTTTGTCCCGAACCCAGACCAACTGTCCGTGGCCCAGTCTACATATTGAACCCAGACCAACTGTCCATGGCCCAGTCTACATATTGAACCCAGACCAACTGTCTGTGGCCCAGTCTACATATTTAACCCAGACCAACTGTCCGTGGCCCAGTCTACATATTGAACCCAGACCAACTGTCCCTGGCCCAGTCTACATATTGAACCCAGACCAACTGTCCATGGCCCAGTCTACATATTGAACCCAGACCAACTGTCCCTGGCCCAGTCTACATATTGAACCCAGACCAACTGTCCATGGCCCAGTCTACATATTTAACCCAGACCAACTGTCCGTGGCCCAGTCTACATATTGAACCCAGACCAACTGTCCGTGGCCCAGTCTACATATTGAACCCAGACCAACTGTCCATGGCCCAGTCTACATATTGAACCCAGACCAACTGTCCGTGGCCCAGTCTACATATTGAACCCAGACCAGCTGTCCGTGGCCCAGTCTACATATTGAACCCAGACCAGCTGTCCGTGGCCCAGTCTACATATTGAACCCAGACCAACTGTCCATGGCCCAGTCTACATATTGAACCCAGACCAGCTGTCCGTGGCCCAGTCTACATATTGAATCGGGACCAAATAGGTTCAAACATGTCCTGCGGCAACCAACTGAAAATGAACAACAGACATATTCCGTCCATGGCGGTTGGGTTGGCTGTAGTTGGACAGATGCCTTAAAGAAGCCTTGTTAGAAACAGGTTTAGTAAAAGGCAGGtggtacagagaggagagagagggggaaccgGATTAAAACAAACCGTAATATGCCTTTAAAAGTAATATACACATTGTTGCGATTTGTTTAAATCGTGGCCCGGGGTGTTAAAGAACAGTAACAGTGAGATAGGCATTTAAACACTTCCTAATACCACCTAGAGAAGAAGACCGTACATCATGCTGGGGGTGATCAGACCAAGGTCTGCTACTGGCTCTGTCGTCCCAGAGATTAGAAGGACTCTCCCAGAATTCCTTTCACCGCATTCTCTCTGAACAAAGCACTGGCATTTTGTGTAACTGGTGTTGAAGATTCTTCTCAGGTGGTCCTGGCCGGGTAGCCCTCACGATCCCTCCTTTCATACGACCAGGGGTTTGTAATGAAGAGTCTATTTAAAGAGAGTTCAAAGGTAACAGACATTTCCTGTTTGTAAGTCAGTGAACTCTGAACTTTGAGACCGAGCTCGGCTAGTGAAGTAAACACAAATAACATTACAatcagcacagagacacagaggctcAACACGTAACACAGACCTGTCCAAAACATGACCAGTGACAGAAAGCGGCATTGTCCTTTTGGGATTTTTGCTTAGTCATAGACATAACCAACGCACTGTAATACACAGAGCATTAGAAAAGGCCCTCACCAGCTGAGAGTTGAACTGACAAAATGGCTCTTACACAAGTagacaaacacacatagacaaGACAGACAAGCATTTCTTGTGCATGAGCCTCGAGTCCAGTCCAGCGGAATGAGAGTGTTCAGAACAGTCATAATAGGGAAGTTCAAACATTCCCCGCTTCTATGAGGTCCTCATCACACAACAACCACCACTGAGACCACAGTCATCATCAATCTATCAATCCATCCATCTAGTGTTCCTGTTCCCGGTCTCTGCGTCGGACAGGGACAGCGAACATCGGCAGGGTCCGGAAGGAGGCGGTGTTGGTGTTGGGCGGCGTCTTGCCCTGCTCTGAGTTGCCTGCCGGCTCGTACGAGCACTTCCTCTTTTGGATGGCCTCGGCGCGCACGGCCAGGCTGCGGGCGCACACGGTGAGAAGGACGATGAGGGTACCCACCAGCAGGCTCACCATGGGCCACAGGAC

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1946524 False 3065 lncRNA 0.47 3 1852003 1855281
TU1946525 True 3103 lncRNA 0.47 2 1852003 1855281

Neighbor

gene id symbol gene type direction distance location
LOC110511332 LOC106576651 coding downstream 335819 1500431 ~ 1516184 (-)
LOC110499704 cpsf6 coding downstream 375486 1454566 ~ 1513068 (-)
LOC110499705 LOC106609801 coding downstream 398117 1448804 ~ 1453886 (-)
LOC118942825 frs2 coding downstream 405586 1363229 ~ 1446417 (-)
LOC110527029 LOC106592131 coding downstream 494972 1348599 ~ 1357031 (-)
ptprbl LOC106609809 coding upstream 8693 1863974 ~ 1985304 (-)
LOC118942826 NA coding upstream 130629 1985910 ~ 1990032 (-)
LOC110499711 ptprr coding upstream 136196 1991477 ~ 2085804 (-)
LOC110512520 LOC106609724 coding upstream 257761 2113042 ~ 2128710 (-)
LOC110499714 LOC106609803 coding upstream 273752 2129033 ~ 2138088 (-)
G1700890 NA non-coding downstream 17838 1830201 ~ 1834165 (-)
G1700889 NA non-coding downstream 21852 1829490 ~ 1830151 (-)
G1700864 NA non-coding downstream 82168 1769393 ~ 1769835 (-)
G1700861 NA non-coding downstream 95218 1756487 ~ 1756785 (-)
G1700859 NA non-coding downstream 98414 1753050 ~ 1753589 (-)
G1700929 NA non-coding upstream 60238 1915519 ~ 1916593 (-)
G1700931 NA non-coding upstream 64235 1919516 ~ 1920401 (-)
G1700943 NA non-coding upstream 106368 1961649 ~ 1962396 (-)
G1700945 NA non-coding upstream 119007 1974288 ~ 1975136 (-)
LOC110511372 LOC106592130 other downstream 528640 1319221 ~ 1348497 (-)
G1700312 NA other downstream 1497494 352487 ~ 354509 (-)
G1701041 NA other upstream 333152 2188433 ~ 2189666 (-)
G1701824 NA other upstream 717393 2572603 ~ 2577051 (-)
G1701930 NA other upstream 928661 2783942 ~ 2829582 (-)
G1702117 NA other upstream 1373721 3229002 ~ 3230041 (-)

Expression


Co-expression Network