G1699963


Basic Information

Item Value
gene id G1699963
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 1917062 ~ 1918379 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1945327
ggtagaaacactactactgTTAGTGGTctggtagaaacactactactggtagaaacactactactggtagaaacactactactgTTAGTGGTctggtagaaacactactactggtagaaacactactactgTTAGTGGTctggtagaaacactactactggtagaaacactactactgATAGTGGTCTGGTAGAAACACTGGTGGTACTCATACAACTCATACAAGTTTAGACTGTCAGACAGCGCATGTACCTGGAGCATGTCAAAGGTCAATTAACAGGTCATTTAACGGGTCATTTAATGGGTCATTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1945327 True 311 lncRNA 0.41 3 1917062 1918379

Neighbor

gene id symbol gene type direction distance location
LOC110536528 kcnmb4 coding upstream 61591 1781883 ~ 1855471 (+)
LOC110499743 cnot2 coding upstream 147408 1688942 ~ 1769720 (+)
LOC118942986 NA coding upstream 243769 1671059 ~ 1673293 (+)
LOC110500915 LOC106576535 coding upstream 247842 1607414 ~ 1669220 (+)
LOC110517600 rab3ip coding upstream 316980 1517362 ~ 1600082 (+)
LOC110499712 LOC106576627 coding downstream 175387 2093766 ~ 2102425 (+)
LOC118942829 LOC105023115 coding downstream 340337 2258716 ~ 2443078 (+)
LOC110490688 NA coding downstream 527227 2445606 ~ 2447635 (+)
LOC110499733 LOC106609838 coding downstream 590648 2509027 ~ 2531457 (+)
trnak-cuu-138 NA coding downstream 602873 2521252 ~ 2521324 (+)
G1699948 NA non-coding upstream 21056 1895065 ~ 1896006 (+)
G1699944 NA non-coding upstream 32739 1883920 ~ 1884323 (+)
G1699937 NA non-coding upstream 42402 1874055 ~ 1874660 (+)
G1699933 NA non-coding upstream 49991 1864020 ~ 1867071 (+)
G1699992 NA non-coding downstream 67531 1985910 ~ 1989639 (+)
G1699993 ptprr non-coding downstream 73720 1992099 ~ 1997188 (+)
G1700008 NA non-coding downstream 105979 2024358 ~ 2035346 (+)
G1700019 NA non-coding downstream 125172 2043551 ~ 2044218 (+)
G1700072 NA non-coding downstream 225605 2143984 ~ 2148189 (+)
G1699934 NA other upstream 47508 1867694 ~ 1869554 (+)
G1699804 NA other upstream 378182 1537956 ~ 1538880 (+)
G1699724 LOC106592130 other upstream 573924 1342499 ~ 1343138 (+)
LOC110519348 tbc1d15 other downstream 720961 2588642 ~ 2667278 (+)
G1701265 NA other downstream 926325 2844704 ~ 2849603 (+)
G1701596 NA other downstream 1855660 3774039 ~ 3776261 (+)
G1701654 NA other downstream 2014408 3932787 ~ 3936037 (+)
LOC110516816 LOC107655592 other downstream 2465677 4384016 ~ 4441236 (+)

Expression


Co-expression Network