G1699993 (ptprr)


Basic Information

Item Value
gene id G1699993
gene name ptprr
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 1992099 ~ 1997188 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1945376
TGGAAAATAAATGATTTTCTGAAAAGAAAAAGGTTTTGTTATTAAAGATTGATTTACTGATGAAACGTCGTTTCAGAGCCAGGGTAGATCACACGGCACCTGATAACAGAGAGCTTTGGTATGGAACATTGGATCACACGGCGGCCATGACAGTTCTCTGTGAATACGGTAGATCTACAGGAGGGGCCTATAGCAGGGGGCTGCCAAACTCAATTCCTGAAGGGCCTGCGTGTCGGCTGGCTTTTTATGTTTGTTATTTGCTTCCAATTCAGTGTGTATAATGGCCATCCCCATGGTGTAAATACCTTTTGATGTGTAGTGGCCGTGCAGACAGGCCCAATCGTTCCCTCACCTTTCATACACTGATCTTTCAATGGATGATCAACATGCTATTAGACGTATAGTATATGGCAGAGGGGCAGCTTCTAGTGTGTTACTGAGAGAAAAGCCAACCTCCAATGGAATATAACAGTCTTCAGAATAATAACCTTTGTGTAACAACACatagttaaaaataaataaaaataaataatcagaattcaAAAATATCCTAGTAAAGTCACAAAGACAAGTGCTATTCATTTCAACAACGTACTTTTTCCTTTTTAATAGAAACACCATGGACGATTCAAGGACCACAGACTACCTACCCATCCACTATAGCGCATAGTAGTAAGAGGTCAGAGTGTAGGTATACTACGGAATCAATATCAGGCAATCTGATTGGACAGAGCTGCAGTATCAGAGAGTTTGATTGGACAGAGGCAGGTTGCTCACAACAACGTTTTCAGAAGCAGAGCTGCTCACGAATGACaggaagtagtagaagaagaggaggaaagagaggaagagaagaaaggatACATTACATTCAGAGACAAAATCACCGGTccatacctccatctctctctctgtaaggaGACTCAATCAATCAGCCAATAGCAGTCCAGGCTGTCCATACATGTCCACAAAGACAAAGCCCACAAGGACATCTACCATCCAATCGTCACGCAAACATCCACTTCCTCATTAGTCACATGACCTCACAGTCACCGGGTAAGATAGGTCCTTCCCGCCAGGGAGAAATTAAATTCCACTTCCTGGAAAAACCTGGCATGTTTTAACGAAAACTTCCTGGCCTCTGTTCATTGGCCGGTGTCGGCGGAGAGGCGTGTCTCGAAGAGGCTCAAGGCGTGGTGGACAAACTCGTACTGCTCCCCTGTCTGGATCAGACCTCCTCTGTCCGCTCTGAGCTGACACACAATCCCCAGCACATCCACCACTCCCTCCAGCTCCAACTGACGACAGCCTATCGTCGTGGCGATGAAGCAGCCCGTTCGGCCAATCCCTGCGCTGCAGTGTACGATGACGGGTCCCTGCGATGGGGAGCCCGTCCTGTCCTCCTCCACGTCTCTCATCAGCTGGAGCAGGGGCTGGGCGCTGTCTGGGGTCTTATGGTCCGGCCACGATGTGTACCAGTAGTGCTTCACCACACGACTCTGGGCCC

Function

symbol description
ptprr Predicted to enable protein tyrosine phosphatase activity. Predicted to act upstream of or within protein dephosphorylation. Orthologous to human PTPRR (protein tyrosine phosphatase receptor type R).

NR:

description
receptor-type tyrosine-protein phosphatase R-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1945376 True 1507 lncRNA 0.47 2 1992099 1997188

Neighbor

gene id symbol gene type direction distance location
LOC110536528 kcnmb4 coding upstream 136628 1781883 ~ 1855471 (+)
LOC110499743 cnot2 coding upstream 222445 1688942 ~ 1769720 (+)
LOC118942986 NA coding upstream 318806 1671059 ~ 1673293 (+)
LOC110500915 LOC106576535 coding upstream 322879 1607414 ~ 1669220 (+)
LOC110517600 rab3ip coding upstream 392017 1517362 ~ 1600082 (+)
LOC110499712 LOC106576627 coding downstream 96578 2093766 ~ 2102425 (+)
LOC118942829 LOC105023115 coding downstream 261528 2258716 ~ 2443078 (+)
LOC110490688 NA coding downstream 448418 2445606 ~ 2447635 (+)
LOC110499733 LOC106609838 coding downstream 511839 2509027 ~ 2531457 (+)
trnak-cuu-138 NA coding downstream 524064 2521252 ~ 2521324 (+)
G1699992 NA non-coding upstream 2460 1985910 ~ 1989639 (+)
G1699963 NA non-coding upstream 73720 1917062 ~ 1918379 (+)
G1699948 NA non-coding upstream 96093 1895065 ~ 1896006 (+)
G1699944 NA non-coding upstream 107776 1883920 ~ 1884323 (+)
G1699937 NA non-coding upstream 117439 1874055 ~ 1874660 (+)
G1700008 NA non-coding downstream 27170 2024358 ~ 2035346 (+)
G1700019 NA non-coding downstream 46363 2043551 ~ 2044218 (+)
G1700072 NA non-coding downstream 146796 2143984 ~ 2148189 (+)
G1700083 NA non-coding downstream 192982 2190170 ~ 2190861 (+)
G1700084 NA non-coding downstream 198181 2195369 ~ 2199781 (+)
G1699934 NA other upstream 122545 1867694 ~ 1869554 (+)
G1699804 NA other upstream 453219 1537956 ~ 1538880 (+)
G1699724 LOC106592130 other upstream 648961 1342499 ~ 1343138 (+)
LOC110519348 tbc1d15 other downstream 642152 2588642 ~ 2667278 (+)
G1701265 NA other downstream 847516 2844704 ~ 2849603 (+)
G1701596 NA other downstream 1776851 3774039 ~ 3776261 (+)
G1701654 NA other downstream 1935599 3932787 ~ 3936037 (+)
LOC110516816 LOC107655592 other downstream 2386868 4384016 ~ 4441236 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) G111531 NA non-coding CM030134.1 CM030134.1 14628726 ~ 14632980 (+)