G1700008


Basic Information

Item Value
gene id G1700008
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 2024358 ~ 2035346 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1945395
tctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctgtctctctctctgtccctctctctctctctctgtctctctctgtccctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctgtctctctccctctattcctctctctctctgtccctctctctctctctgtccctctctctctctctctctctctgtctctct
>TU1945397
tctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctgtctctctctctgtccctctctctctctctctgtctctctctgtccctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctgtctctctctctctctctctgtctctctctgtccctctctctctctctgtccctctctctctctctgtctctctgtctctc
>TU1945396
ctctctgtccctctctctctctctctctctctgtctctctctgtccctctctctctctctctgtctctctctgtccctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctgtctctctctctctctctctgtctctctctgtccctctctctctctctgtccctctctctctctctgtctctctgtctctc

Function

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU1945395 False 263 lncRNA 0.51 2 2024358 2035225
TU1945397 False 262 lncRNA 0.52 3 2024358 2035346
TU1945396 True 227 lncRNA 0.52 2 2034998 2035346

Neighbor

gene id symbol gene type direction distance location
LOC110536528 kcnmb4 coding upstream 168887 1781883 ~ 1855471 (+)
LOC110499743 cnot2 coding upstream 254704 1688942 ~ 1769720 (+)
LOC118942986 NA coding upstream 351065 1671059 ~ 1673293 (+)
LOC110500915 LOC106576535 coding upstream 355138 1607414 ~ 1669220 (+)
LOC110517600 rab3ip coding upstream 424276 1517362 ~ 1600082 (+)
LOC110499712 LOC106576627 coding downstream 58420 2093766 ~ 2102425 (+)
LOC118942829 LOC105023115 coding downstream 223370 2258716 ~ 2443078 (+)
LOC110490688 NA coding downstream 410260 2445606 ~ 2447635 (+)
LOC110499733 LOC106609838 coding downstream 473681 2509027 ~ 2531457 (+)
trnak-cuu-138 NA coding downstream 485906 2521252 ~ 2521324 (+)
G1699993 ptprr non-coding upstream 27170 1992099 ~ 1997188 (+)
G1699992 NA non-coding upstream 34719 1985910 ~ 1989639 (+)
G1699963 NA non-coding upstream 105979 1917062 ~ 1918379 (+)
G1699948 NA non-coding upstream 128352 1895065 ~ 1896006 (+)
G1699944 NA non-coding upstream 140035 1883920 ~ 1884323 (+)
G1700019 NA non-coding downstream 8205 2043551 ~ 2044218 (+)
G1700072 NA non-coding downstream 108638 2143984 ~ 2148189 (+)
G1700083 NA non-coding downstream 154824 2190170 ~ 2190861 (+)
G1700084 NA non-coding downstream 160023 2195369 ~ 2199781 (+)
G1700085 NA non-coding downstream 161359 2196705 ~ 2198399 (+)
G1699934 NA other upstream 154804 1867694 ~ 1869554 (+)
G1699804 NA other upstream 485478 1537956 ~ 1538880 (+)
G1699724 LOC106592130 other upstream 681220 1342499 ~ 1343138 (+)
LOC110519348 tbc1d15 other downstream 603994 2588642 ~ 2667278 (+)
G1701265 NA other downstream 809358 2844704 ~ 2849603 (+)
G1701596 NA other downstream 1738693 3774039 ~ 3776261 (+)
G1701654 NA other downstream 1897441 3932787 ~ 3936037 (+)
LOC110516816 LOC107655592 other downstream 2348710 4384016 ~ 4441236 (+)

Expression


Co-expression Network