G1700083


Basic Information

Item Value
gene id G1700083
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 2190170 ~ 2190861 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1945490
TCAAAAAGGGGAACATCCATAAAGACATTGGTCACAGGCCTTGAACAGAAGACATTCTGACATGTACTGCAATCATTATACAACTCAAATATATAACAGGTTAAATGTATATACAGCGTGATCAATATTTACCGTCAGACTTTAATATCTACGAGATGATAGCAATAAAACGGGGGAAAAAGTTCAACATTTCAGCATGAATAATACACAGTTCAGTGTATGGACAGCGAAGCCCCCCATtcagagagagacgtagagcaGTACAATGAAACAGAGCTCCTTTAAAGAAAAACACACTAATTCAGGTTCAAGGACATATGGATCAACCAACTTTAACAAAGATCTGAAATCTAAATCACAGCATCATTTGATGCAGGTAAATGATGGAGAAACACATGATGCATTGTGGTCCATAGTTCAGCAGGTTGGGGGTTCCAGTCCATTCACAAAGCAAACCTAATTCCAAAATGTTCCTGATTGAAGAGAactggaatttcagtgtacttcctgaatggacTAGATTTGAACCCCAAAGTTGAGTATCAAATACATGTTCCAAGCATGCTGTATGGGACATGTCAAAGCCAGCTTTTGATCAAGTCATGATCGGGGTCCATTTGAATTGAAGCCAGTCAATTGAGGAAGTGAATTGTATTTAACATTGCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1945490 True 666 lncRNA 0.38 2 2190170 2190861

Neighbor

gene id symbol gene type direction distance location
LOC110499712 LOC106576627 coding upstream 87745 2093766 ~ 2102425 (+)
LOC110536528 kcnmb4 coding upstream 334699 1781883 ~ 1855471 (+)
LOC110499743 cnot2 coding upstream 420516 1688942 ~ 1769720 (+)
LOC118942986 NA coding upstream 516877 1671059 ~ 1673293 (+)
LOC110500915 LOC106576535 coding upstream 520950 1607414 ~ 1669220 (+)
LOC118942829 LOC105023115 coding downstream 67855 2258716 ~ 2443078 (+)
LOC110490688 NA coding downstream 254745 2445606 ~ 2447635 (+)
LOC110499733 LOC106609838 coding downstream 318166 2509027 ~ 2531457 (+)
trnak-cuu-138 NA coding downstream 330391 2521252 ~ 2521324 (+)
trnak-cuu-139 NA coding downstream 330943 2521804 ~ 2521876 (+)
G1700072 NA non-coding upstream 41981 2143984 ~ 2148189 (+)
G1700019 NA non-coding upstream 145952 2043551 ~ 2044218 (+)
G1700008 NA non-coding upstream 154824 2024358 ~ 2035346 (+)
G1699993 ptprr non-coding upstream 192982 1992099 ~ 1997188 (+)
G1699992 NA non-coding upstream 200531 1985910 ~ 1989639 (+)
G1700084 NA non-coding downstream 4508 2195369 ~ 2199781 (+)
G1700085 NA non-coding downstream 5844 2196705 ~ 2198399 (+)
G1700105 NA non-coding downstream 63376 2254237 ~ 2254864 (+)
G1700111 NA non-coding downstream 76704 2267565 ~ 2267980 (+)
G1700147 NA non-coding downstream 181878 2372739 ~ 2373488 (+)
G1699934 NA other upstream 320616 1867694 ~ 1869554 (+)
G1699804 NA other upstream 651290 1537956 ~ 1538880 (+)
G1699724 LOC106592130 other upstream 847032 1342499 ~ 1343138 (+)
LOC110519348 tbc1d15 other downstream 448479 2588642 ~ 2667278 (+)
G1701265 NA other downstream 653843 2844704 ~ 2849603 (+)
G1701596 NA other downstream 1583178 3774039 ~ 3776261 (+)
G1701654 NA other downstream 1741926 3932787 ~ 3936037 (+)
LOC110516816 LOC107655592 other downstream 2193195 4384016 ~ 4441236 (+)

Expression


Co-expression Network