G1701124


Basic Information

Item Value
gene id G1701124
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 2443312 ~ 2443732 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1946815
aCTTACGTGCCTGTTCATTTGTATTATACTGTGACAATCTGTTTTCCTTGTGTAGAATATGCCAGTTTGTTTTAAGGTAAGGTTTGGTGTGTATTCATATTTGACCCGACTATTTAGTTGTTAAAGTTTTCCCCCTATTTAGTGAGTTGTTGCTTTTAGACTGTTTTATCGATGCACCGGTACCGTTTAGAGTGATGACAACACAGTATATTACATCTTTAGTTGTGTTTACCATTTAACTACGTCAATCACCAGCATGCATGATTCTCCTCCATTACCTAGTGACTAGAGCACATacctggg
>TU1946816
aCTTACGTGCCTGTTCATTTGTATTATACTGTGACAATCTGTTTTCCTTGTGTAGAATATGCCAGTTTGTTTTAAGGTAAGGTTTGGTGTGTATTCATATTTGACCCGACTATTTAGTTGTTAAAGTTTTCCCCCTATTTAGTGAGTTGTTGCTTTTAGACTGTTTTATCGATGCACCGGTACCGTTTAGAGTGATGACAACACAGTATATTACATCTTTAGTTGTGTTTACCATTTAACTACGTCAATCACCAGCATGCATGATTCTCCTCCATTACCTAGTGACTAGAGCACATacctgggggaggaggggagaggagaggagaggagaggagaggagagaaagagagggagagcgagaggagagaaagagaggggagaggagttgagaggagaggagagaaagaaagggagaggagag
>TU1946814
TGTTTTCCTTGTGTAGAATATGCCAGTTTGTTTTAAGGTAAGGTTTGGTGTGTATTCATATTTGACCCGACTATTTAGTTGTTAAAGTTTTCCCCCTATTTAGTGAGTTGTTGCTTTTAGACTGTTTTATCGATGCACCGGTACCGTTTAGAGTGATGACAACACAGTATATTACATCTTTAGTTGTGTTTACCATTTAACTACGTCAATCACCAGCATGCATGATTCTCCTCCATTACCTAGTGACTAGAGCACATacctggg
>TU1946817
TGTTTTCCTTGTGTAGAATATGCCAGTTTGTTTTAAGGTAAGGTTTGGTGTGTATTCATATTTGACCCGACTATTTAGTTGTTAAAGTTTTCCCCCTATTTAGTGAGTTGTTGCTTTTAGACTGTTTTATCGATGCACCGGTACCGTTTAGAGTGATGACAACACAGTATATTACATCTTTAGTTGTGTTTACCATTTAACTACGTCAATCACCAGCATGCATGATTCTCCTCCATTACCTAGTGACTAGAGCACATacctgggggaggaggggagaggagaggagaggagaggagaggagagaaagagagggagagcgagaggagagaaagagaggggagaggagttgagaggagaggagagaaagaaagggagaggagag

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1946815 False 303 lncRNA 0.38 1 2443312 2443614
TU1946816 False 421 lncRNA 0.43 1 2443312 2443732
TU1946814 False 264 lncRNA 0.38 1 2443351 2443614
TU1946817 True 382 lncRNA 0.44 1 2443351 2443732

Neighbor

gene id symbol gene type direction distance location
LOC118942829 LOC105023115 coding upstream 234 2258716 ~ 2443078 (+)
LOC110499712 LOC106576627 coding upstream 340887 2093766 ~ 2102425 (+)
LOC110536528 kcnmb4 coding upstream 587841 1781883 ~ 1855471 (+)
LOC110499743 cnot2 coding upstream 673658 1688942 ~ 1769720 (+)
LOC118942986 NA coding upstream 770019 1671059 ~ 1673293 (+)
LOC110490688 NA coding downstream 1874 2445606 ~ 2447635 (+)
LOC110499733 LOC106609838 coding downstream 65295 2509027 ~ 2531457 (+)
trnak-cuu-138 NA coding downstream 77520 2521252 ~ 2521324 (+)
trnak-cuu-139 NA coding downstream 78072 2521804 ~ 2521876 (+)
trnak-cuu-140 NA coding downstream 79380 2523112 ~ 2523184 (+)
G1700159 NA non-coding upstream 31546 2410755 ~ 2411766 (+)
G1700158 NA non-coding upstream 41433 2400006 ~ 2401879 (+)
G1700155 NA non-coding upstream 49663 2389949 ~ 2393649 (+)
G1700147 NA non-coding upstream 69824 2372739 ~ 2373488 (+)
G1701136 NA non-coding downstream 10349 2454081 ~ 2454402 (+)
G1701137 NA non-coding downstream 11930 2455662 ~ 2455862 (+)
G1701163 NA non-coding downstream 47223 2490955 ~ 2492518 (+)
G1701165 NA non-coding downstream 52660 2496392 ~ 2497025 (+)
G1699934 NA other upstream 573758 1867694 ~ 1869554 (+)
LOC110500915 LOC106576535 other upstream 774092 1607414 ~ 1669220 (+)
G1699804 NA other upstream 904432 1537956 ~ 1538880 (+)
G1699724 LOC106592130 other upstream 1100174 1342499 ~ 1343138 (+)
LOC110519348 tbc1d15 other downstream 195608 2588642 ~ 2667278 (+)
G1701265 NA other downstream 400972 2844704 ~ 2849603 (+)
G1701596 NA other downstream 1330307 3774039 ~ 3776261 (+)
G1701654 NA other downstream 1489055 3932787 ~ 3936037 (+)
LOC110516816 LOC107655592 other downstream 1940324 4384016 ~ 4441236 (+)

Expression


Co-expression Network