G1701163


Basic Information

Item Value
gene id G1701163
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 2490955 ~ 2492518 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1946877
CATGAAGTACTGTAGCCTTCAGTCCTCCTACTGGACACAGTAAGTACTGTAACCTTCAGTCTTCCTACTGGACACATGAAGTTCTGTAACCTTCAGTCCTCCTCCTGGACACATGAAGTACTGTAACCTTCAGTCCTCCTCCTGGACACATGAAGTACTGTAGCCTTCAGTCCTCCTACTGGACACATGAAGTACTGTCTGGATTCTCAGGGTTTCTTCTCCCTCCAACTCAATCCCTTTACTCTACCTCTATCTCCTGCTCCCTatttctgtcacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacaaacacaaacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacaaacacacacacacacacacacacacacacaaacacacaaactgaGAGGTTACGATTTGGTTCCAAACTGAAAGCGTCTGTCATAAATCAGAGAGAGGCTCTTTGCACCAAGCTGGCAGAGAAGAGGTGAACTTCCTGGGAAATCAAAAAGGCCAATACAATCagtgagtcccaaatggtactgtgttccctatatagtccataaggttctggtctaaagtagtgcactatgtcgggaatagggtggactctggtctaaagtagtgcactatgtagggaatagggtggactctggtctaaagtagtgcactatgtagggaatagggtggactctggtctaaagtagtgcactatgtagggaatagggtggactctggtctaaagtagtgcactatgtagggaatagggtggactctggtctaaagtagtgcactaatgtagggaatagggtgtcatttggggagCGGACAGACAGTGAACACACAACACATTGTCTTTAACTATCTGGCACAGAGACAACAGATATAAATCGataaaagaaggagagagaaacctTTGAGTTAATCCGTTCATCCTGGATTCAGAcacagagtctctctctctctctgtttgctgGAAGAAACGGAGGACAAGCTAAAACACGTAGCGTCTGAATGATCTTAActgtcctcctcctgcaagaacaggagtccctgatctgatctgtcctcctcctgcaagaacaggagtcactgatc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1946877 True 1165 lncRNA 0.46 2 2490955 2492518

Neighbor

gene id symbol gene type direction distance location
LOC110490688 NA coding upstream 43377 2445606 ~ 2447635 (+)
LOC118942829 LOC105023115 coding upstream 47877 2258716 ~ 2443078 (+)
LOC110499712 LOC106576627 coding upstream 388530 2093766 ~ 2102425 (+)
LOC110536528 kcnmb4 coding upstream 635484 1781883 ~ 1855471 (+)
LOC110499743 cnot2 coding upstream 721301 1688942 ~ 1769720 (+)
LOC110499733 LOC106609838 coding downstream 16509 2509027 ~ 2531457 (+)
trnak-cuu-138 NA coding downstream 28734 2521252 ~ 2521324 (+)
trnak-cuu-139 NA coding downstream 29286 2521804 ~ 2521876 (+)
trnak-cuu-140 NA coding downstream 30594 2523112 ~ 2523184 (+)
trnak-cuu-141 NA coding downstream 31932 2524450 ~ 2524522 (+)
G1701137 NA non-coding upstream 35093 2455662 ~ 2455862 (+)
G1701136 NA non-coding upstream 36553 2454081 ~ 2454402 (+)
G1701124 NA non-coding upstream 47223 2443312 ~ 2443732 (+)
G1701165 NA non-coding downstream 3874 2496392 ~ 2497025 (+)
G1701167 NA non-coding downstream 10943 2503461 ~ 2503789 (+)
LOC110499736 NA non-coding downstream 41261 2533735 ~ 2540052 (+)
G1701173 NA non-coding downstream 42853 2535371 ~ 2535876 (+)
G1701154 NA non-coding downstream 85415 2577933 ~ 2578978 (+)
G1699934 NA other upstream 621401 1867694 ~ 1869554 (+)
LOC110500915 LOC106576535 other upstream 821735 1607414 ~ 1669220 (+)
G1699804 NA other upstream 952075 1537956 ~ 1538880 (+)
G1699724 LOC106592130 other upstream 1147817 1342499 ~ 1343138 (+)
LOC110519348 tbc1d15 other downstream 146822 2588642 ~ 2667278 (+)
G1701265 NA other downstream 352186 2844704 ~ 2849603 (+)
G1701596 NA other downstream 1281521 3774039 ~ 3776261 (+)
G1701654 NA other downstream 1440269 3932787 ~ 3936037 (+)
LOC110516816 LOC107655592 other downstream 1891538 4384016 ~ 4441236 (+)

Expression


Co-expression Network