G1701843


Basic Information

Item Value
gene id G1701843
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 2579344 ~ 2580448 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1947760
ggaaaataacatttatttatctATTAGACATGGAGGCCCGTTTCCAACTTCCCATTCTGTCTCATTGATCAAACAAATGATTTATAAAAATCATTCACTAGTCCGTTATTGAAAAGAGAATCAGGTCTACACTTTCATTCTGCCACAAAGCAGCACAAAGATTGCGTCACCCGATCAGGACGTACAAAAATAACTGAAAAATAACTTGAGCTTGTTAATATATCCCGCAGGACTGGTTGGTTCTGATTCAGATGCGGTGGGTTAAATGATGAAGACACACGATTGTTTGTTTATCACCTTGTTATCAATGCTTAGTTCACACAAAAAATatcataaacatttttttttgtcctaGTCATAAATCATAGTACTATATGTCATTAAATCATAGTACTATATGTCATTAAATCCTTATAAAGCAGTAGGATTCAGCGATAGAATAAACTGTTTTCTAAGTGAAGAGCAGAAAGCCAGTAAAGGTGCTGTGGTGATTATTGTCATCGTAGATGTTAAATCCTTCCATCAGTCGAGTGTAGACCTCGTCTCCTGCATCCAACTGCAGTGTGACACCATTGGTTCCACCGTCCTCCGAGTCTGAAACATCGTCGGTCACAGTCACCATTACGAGTCCATTTTTATACAGCGACACTCTTCTCCCCTTGCTGGAGGTTGTAAAGGCGGTGTATGTGAAGTAGTAGACTCCATTAACCGGTGCTCTGAAGATACCCGTCACCGGACTGTAAGCCTCACCAATATTGTTGAAGACATGTTTGTAGGCCAGGATGACATCATCACTATTTGGTCCTTTGGATTCAGACAGCGAGGCTGAGAAGGCCACCTTCGGTCTCTCTCCGTTCGCTCTCTTCAGTTCCTCCACGGTGGCTCCCATCTCATTCAGTTTGGTGCTCTGTTGAGCCACAATGGCTCTCAGCTCCTGGAGTAGGACTCTCTGTTCCTCCAACTGGCTCTCGCTGGTCCTCCCTGTGGTTTCCATAAAGATTAGCTTCTTGTCAATGTCGCTACTTTGAAAAACCTGCAGCTCAGAGAGACAGCTGCAGAGAACAA
>TU1947762
ggaaaataacatttatttatctATTAGACATGGAGGCCCGTTTCCAACTTCCCATTCTGTCTCATTGATCAAACAAATGATTTATAAAAATCATTCACTAGTCCGTTATTGAAAAGAGAATCAGGTCTACACTTTCATTCTGCCACAAAGCAGCACAAAGATTGCGTCACCCGATCAGGACGTACAAAAATAACTGAAAAATAACTTGAGCTTGTTAATATATCCCGCAGGACTGGTTGGTTCTGATTCAGATGCGGTGGGTTAAATGATGAAGACACACGATTGTTTGTTTATCACCTTGTTATCAATGCTTAGTTCACACAAAAAATatcataaacatttttttttgtcctaGTCATAAATCATAGTACGTCATTAAATCATAGTACTATATGTCATTAAATCATAGTACTATATGTCATTAAATCCTTATAAAGCAGTAGGATTCAGCGATAGAATAAACTGTTTTCTAAGTGAAGAGCAGAAAGCCAGTAAAGGTGCTGTGGTGATTATTGTCATCGTAGATGTTAAATCCTTCCATCAGTCGAGTGTAGACCTCGTCTCCTGCATCCAACTGCAGTGTGACACCATTGGTTCCACCGTCCTCCGAGTCTGAAACATCGTCGGTCACAGTCACCATTACGAGTCCATTTTTATACAGCGACACTCTTCTCCCCTTGCTGGAGGTTGTAAAGGCGGTGTATGTGAAGTAGTAGACTCCATTAACCGGTGCTCTGAAGATACCCGTCACCGGACTGTAAGCCTCACCAATATTGTTGAAGACATGTTTGTAGGCCAGGATGACATCATCACTATTTGGTCCTTTGGATTCAGACAGCGAGGCTGAGAAGGCCACCTTCGGTCTCTCTCCGTTCGCTCTCTTCAGTTCCTCCACGGTGGCTCCCATCTCATTCAGTTTGGTGCTCTGTTGAGCCACAATGGCTCTCAGCTCCTGGAGTAGGACTCTCTGTTCCTCCAACTGGCTCTCGCTGGTCCTCCCTGTGGTTTCCATAAAGATTAGCTTCTTGTCAATGTCGCTACTTTGAAAAACCTGCAGCTCAGAGAGACAGCTGCAGAGAACAA

Function

NR:

description
complement C1q-like protein 2

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU1947760 False 1065 lncRNA 0.43 2 2579344 2580448
TU1947762 True 1083 lncRNA 0.42 2 2579344 2580448

Neighbor

gene id symbol gene type direction distance location
LOC110499718 LOC106594636 coding downstream 356144 2190139 ~ 2223200 (-)
LOC118942828 LOC106594636 coding downstream 420388 2150983 ~ 2158956 (-)
LOC118942827 NA coding downstream 429633 2143995 ~ 2149711 (-)
LOC110499714 LOC106609803 coding downstream 441256 2129033 ~ 2138088 (-)
LOC110512520 LOC106609724 coding downstream 450634 2113042 ~ 2128710 (-)
LOC118942830 NA coding upstream 448901 3029349 ~ 3030468 (-)
LOC110499739 grip1 coding upstream 1008082 3585864 ~ 4306764 (-)
trnav-uac-23 NA coding upstream 1633444 4213892 ~ 4213965 (-)
LOC110499732 dyrk2 coding upstream 2031434 4611882 ~ 4636619 (-)
LOC110516460 LOC106593189 coding upstream 2112435 4692883 ~ 4704523 (-)
G1701828 NA non-coding downstream 370 2578573 ~ 2578974 (-)
G1701842 NA non-coding downstream 806 2578028 ~ 2578538 (-)
G1701841 NA non-coding downstream 1997 2577138 ~ 2577347 (-)
G1701824 NA non-coding downstream 2293 2572603 ~ 2577051 (-)
G1701837 NA non-coding downstream 15640 2562497 ~ 2563704 (-)
G1701845 NA non-coding upstream 4090 2584538 ~ 2584920 (-)
G1701848 NA non-coding upstream 8192 2588640 ~ 2588937 (-)
G1701849 NA non-coding upstream 8606 2589054 ~ 2589524 (-)
G1701851 NA non-coding upstream 11279 2591727 ~ 2591956 (-)
G1701852 NA non-coding upstream 11636 2592084 ~ 2592330 (-)
G1701041 NA other downstream 389678 2188433 ~ 2189666 (-)
LOC118942825 frs2 other downstream 1133468 1363229 ~ 1446417 (-)
LOC110511372 LOC106592130 other downstream 1255981 1319221 ~ 1348497 (-)
G1701930 NA other upstream 203494 2783942 ~ 2829582 (-)
G1702117 NA other upstream 648554 3229002 ~ 3230041 (-)
G1702141 NA other upstream 700654 3281102 ~ 3518377 (-)
G1702914 NA other upstream 1861801 4442249 ~ 4444919 (-)

Expression


Co-expression Network