G1701893


Basic Information

Item Value
gene id G1701893
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 2665479 ~ 2780374 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1947845
GGCCTCCTCGTGTTTTCTGCCTGCCAAGTCGTTTCCACCTGAGATCAGCTCGGCTCCTCCAGAGGAAGAAAGATCATGTTATtcacatctcaaatcaaatcaaatggtatttgtcacatgtgccgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagacctcacagtgaaatgctgaatacatcaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagacctcacagtgaaatgctgaatacaacaggtgtagtagacctcacagtgaaatgctgaataaaacaggtgtagtagacctcacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagaccttatagtgaaatgctgaatacaacaggtgtagtagaccttatagtgaaatgctgaatacaacaggtgtagtagaccttatagtgaaatgctgactacacagtgaaatgttgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagacctcacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtggtagaccttacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgttgtagaccttacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagacctcacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgcagaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacatgtgtagtagaccttacagtgaaatgct
>TU1947846
GGCCTCCTCGTGTTTTCTGCCTGCCAAGTCGTTTCCACCTGAGATCAGCTCGGCTCCTCCAGAGGAAGAAAGATCATGTTATtcacatctcaaatcaaatcaaatggtatttgtcacatgtgccgaatacaacaggtgtagtagaccttacagtgaaatgctgaatgcaacaggtgtagtagacctcacagtgaaatgctgaatacaacaggtgtagtagacctcacagtgaaatgctgaatacaacaggtgtagtagaccttacagggaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagacctcacagtgaaatgctgaatacatcaggtgtagtagacctcacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagaccttatagtgaaatgctgaatacaacaggtgtagtagaccttatagtgaaatgctgactgcacagtaaaatgttgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagcagaccttacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagaccttatagtgaaatgctgaatacaacaggtgtagtagaccttatagtgaaatgctgactacacagtgaaatgttgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagacctcacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtggtagaccttacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgttgtagaccttacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagacctcacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgcagaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacatgtgtagtagaccttacagtgaaatgct
>TU1947849
caggagttgtagaccttacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgccgaatacaacaggtgtggtagaccttacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtggtagaccttacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagacctcacagtgaaatgctgaatacaacaggtgcagtagaccttacagtgaaatgctgaatacaacaggtgtagtagacctcacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgcagaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacatgtgtagtagaccttacagtgaaatgct
>TU1947851
GGCCTCCTCGTGTTTTCTGCCTGCCAAGTCGTTTCCACCTGAGATCAGCTCGGCTCCTCCAGAGGAAGAAAGATCATGTTATtcacatctcaaatcaaatcaaatggtatttgtcacatgtgccgaatacaacaggtgtagtagaccttacagtgaaatgctgaatgcaacaggtgtagtagacctcacagtgaaatgctgaatacaacaggtgtagtagacctcacagtgaaatgctgaatacaacaggtgtagtagaccttacagggaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagacctcacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgccgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagacctcacagtgaaatgctgaatacaacaggtgtagtagacctcacagtgaaatgccgaatacaacaggtgtagtagacctcacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgcagaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacatgtgtagtagaccttacagtgaaatgct
>TU1947852
GGCCTCCTCGTGTTTTCTGCCTGCCAAGTCGTTTCCACCTGAGATCAGCTCGGCTCCTCCAGAGGAAGAAAGATCATGTTATtcacatctcaaatcaaatcaaatggtatttgtcacatgtgccgaatacaacaggtgtagtagaccttacagtgaaatgctgaatgcaacaggtgtagtagacctcacagtgaaatgctgaatacaacaggtgtagtagacctcacagtgaaatgctgaatacaacaggtgtagtagaccttacagggaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagacctcacagtgaaatgctgaatacatcaggtgtagtagacctcacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtggtagaccttacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgttgtagaccttacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagacctcacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgcagaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacatgtgtagtagaccttacagtgaaatgct
>TU1947831
GGCCTCCTCGTGTTTTCTGCCTGCCAAGTCGTTTCCACCTGAGATCAGCTCGGCTCCTCCAGAGGAAGAAAGATCATGTTATtcacatctcaaatcaaatcaaatggtatttgtcacatgtgccgaatacaacaggtgtagtagaccttacagtgaaatgctgaatgcaacaggtgtagtagacctcacagtgaaatgctgaatacaacaggtgtagtagacctcacagtgaaatgctgaatacaacaggtgtagtagaccttacagggaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagacctcacagtgaaatgctgaatacatcaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagacctcacagtgaaatgctgaatacaacaggtgtagtagacctcacagtgaaatgctgaataaaacaggtgtagtagacctcacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgcagaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagaccttacagggaaatgctgaatacaacaggtgtagtagaccctacagtgaaatgtgtacttacaagtccttaaccaacaatgcagttttaagaataatac
>TU1947834
GGCCTCCTCGTGTTTTCTGCCTGCCAAGTCGTTTCCACCTGAGATCAGCTCGGCTCCTCCAGAGGAAGAAAGATCATGTTATtcacatctcaaatcaaatcaaatggtatttgtcacatgtgccgaatacaacaggtgtagtagaccttacagtgaaatgctgaatgcaacaggtgtagtagacctcacagtgaaatgctgaatacaacaggtgtagtagacctcacagtgaaatgctgaatacaacaggtgtagtagaccttacagggaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagacctcacagtgaaatgctgaatacatcaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagacctcacagtgaaatgctgaataaaacaggtgtagtagacctcacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagaccttatagtgaaatgctgaatacaacaggtgtagtagaccttatagtgaaatgctgactacacagtgaaatgttgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgcagaatacaacaggtgtagtagaccttacagggaaatgctgaatacaacaggtgtagtagaccctacagtgaaatgtgtacttacaagtccttaaccaacaatgcagttttaagaataatac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1947845 False 1207 lncRNA 0.40 6 2665479 2780374
TU1947846 False 1454 lncRNA 0.40 5 2665479 2780374
TU1947849 False 714 lncRNA 0.40 4 2665479 2726998
TU1947851 False 846 lncRNA 0.42 4 2665479 2780374
TU1947852 False 960 lncRNA 0.41 4 2665479 2780374
TU1947831 False 700 lncRNA 0.41 2 2779029 2780374
TU1947834 True 1023 lncRNA 0.40 4 2779029 2780374

Neighbor

gene id symbol gene type direction distance location
LOC110499718 LOC106594636 coding downstream 442279 2190139 ~ 2223200 (-)
LOC118942828 LOC106594636 coding downstream 506523 2150983 ~ 2158956 (-)
LOC118942827 NA coding downstream 515768 2143995 ~ 2149711 (-)
LOC110499714 LOC106609803 coding downstream 527391 2129033 ~ 2138088 (-)
LOC110512520 LOC106609724 coding downstream 536769 2113042 ~ 2128710 (-)
LOC118942830 NA coding upstream 248975 3029349 ~ 3030468 (-)
LOC110499739 grip1 coding upstream 808156 3585864 ~ 4306764 (-)
trnav-uac-23 NA coding upstream 1433518 4213892 ~ 4213965 (-)
LOC110499732 dyrk2 coding upstream 1831508 4611882 ~ 4636619 (-)
LOC110516460 LOC106593189 coding upstream 1912509 4692883 ~ 4704523 (-)
G1701878 LOC106594572 non-coding downstream 17002 2639201 ~ 2648477 (-)
G1701880 NA non-coding downstream 20886 2644067 ~ 2644593 (-)
G1701877 NA non-coding downstream 28649 2636452 ~ 2636830 (-)
G1701869 NA non-coding downstream 39726 2624664 ~ 2625753 (-)
G1701868 NA non-coding downstream 41049 2624199 ~ 2624430 (-)
G1701961 NA non-coding upstream 72440 2852814 ~ 2854209 (-)
G1701967 NA non-coding upstream 80008 2860382 ~ 2860900 (-)
G1701976 NA non-coding upstream 94575 2874949 ~ 2892965 (-)
G1701977 NA non-coding upstream 96521 2876895 ~ 2895091 (-)
G1702016 NA non-coding upstream 220038 3000412 ~ 3000873 (-)
G1701824 NA other downstream 90218 2572603 ~ 2577051 (-)
G1701041 NA other downstream 475813 2188433 ~ 2189666 (-)
LOC118942825 frs2 other downstream 1219603 1363229 ~ 1446417 (-)
LOC110511372 LOC106592130 other downstream 1342116 1319221 ~ 1348497 (-)
G1701930 NA other upstream 3568 2783942 ~ 2829582 (-)
G1702117 NA other upstream 448628 3229002 ~ 3230041 (-)
G1702141 NA other upstream 500728 3281102 ~ 3518377 (-)
G1702914 NA other upstream 1661875 4442249 ~ 4444919 (-)

Expression


Co-expression Network