G1701399


Basic Information

Item Value
gene id G1701399
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 3164081 ~ 3168820 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1947176
tagattaactacatgttggtactaggtctaggtttgatgatagattaactactgtacatgttggtattaaggctaggtttgatgatagattaactactgtacatgttggtattaggtctaggtttgatgatagattaactactgtacatgttggtattaggtctaggtttgatgatagattaactactgtacatgttggtaataggtctaggtttgatgatagtttaacta

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1947176 True 231 lncRNA 0.33 3 3164081 3168820

Neighbor

gene id symbol gene type direction distance location
LOC118942987 NA coding upstream 432268 2730641 ~ 2731813 (+)
LOC110519348 tbc1d15 coding upstream 496803 2588642 ~ 2667278 (+)
LOC110519746 LOC106597902 coding upstream 583622 2579232 ~ 2580459 (+)
LOC110500958 LOC106609839 coding upstream 588899 2541008 ~ 2575182 (+)
LOC110499736 NA coding upstream 624029 2533735 ~ 2540052 (+)
LOC110516257 LOC106590998 coding downstream 216636 3385456 ~ 3391594 (+)
irak3 irak3 coding downstream 374832 3543652 ~ 3562592 (+)
helb LOC106599032 coding downstream 396819 3565639 ~ 3583498 (+)
LOC110516816 LOC107655592 coding downstream 1215196 4384016 ~ 4441236 (+)
si:dkey-39a18.1 LOC106576636 coding downstream 1282296 4451116 ~ 4475091 (+)
G1701313 NA non-coding upstream 213799 2949645 ~ 2950282 (+)
G1701296 NA non-coding upstream 246406 2917050 ~ 2917675 (+)
G1701281 NA non-coding upstream 264955 2880924 ~ 2899126 (+)
G1701280 NA non-coding upstream 266128 2879852 ~ 2897953 (+)
G1701279 NA non-coding upstream 284584 2878732 ~ 2879497 (+)
G1701418 NA non-coding downstream 55312 3224132 ~ 3225043 (+)
G1701421 NA non-coding downstream 59403 3228223 ~ 3228560 (+)
G1701429 NA non-coding downstream 73982 3242802 ~ 3244362 (+)
G1701440 NA non-coding downstream 106330 3275150 ~ 3276857 (+)
G1701449 NA non-coding downstream 137609 3306429 ~ 3306737 (+)
G1701265 NA other upstream 314478 2844704 ~ 2849603 (+)
G1699934 NA other upstream 1294527 1867694 ~ 1869554 (+)
LOC110499743 cnot2 other upstream 1394804 1688942 ~ 1769720 (+)
LOC110500915 LOC106576535 other upstream 1494861 1607414 ~ 1669220 (+)
G1701596 NA other downstream 605219 3774039 ~ 3776261 (+)
G1701654 NA other downstream 763967 3932787 ~ 3936037 (+)
G1702554 NA other downstream 1226173 4394993 ~ 4395515 (+)
G1702793 NA other downstream 1883627 5052447 ~ 5054464 (+)

Expression


Co-expression Network