G1702104


Basic Information

Item Value
gene id G1702104
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 3235497 ~ 3237529 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1948108
CCATTGCTGCTCTGCTCAAAACACAGAACAATATAGTCCCTcatttagaaaaaaaaaacaattttttaatacatcaaaacaacaacaagaaaggAAAAGATGGCGAAGGTCTGAAACTGTTTTCTTCTTGAGGTCTACAGTATCAAGGATTAGCCATAGAGGATATAAATAGCACTGACTTTTACACAGAAAATAAGAGCAATGGACTCCCCAGTAAACCCAATGGGGATTTTCTCTACCAGCCAAGTGTCAACAGTAAAAACTCATTATTATGTTCTATTCTTCATGAAACGAGTCCACAGAGTATATCCAGCTAGCTGTTAGCATCGGCCTGTTAAGTTTACTGGGCTTTGCAGGGTAGCAACAAAACGAGGAATATCTGTCGGGAATATTGTAGAATATTTCCTCTGCTTTTGCTTAAAACACGGGTTTCTGAGTGAAACTTTGTTATGAAGTCATTAGCGGCACATGAAAACCCAAGCATGACGTCTGACCAAAACAACGTAAGTTTCTATATGTCATCATTACTACACCGCGGCTCACACAGGCTGTATCCACTGGCTCTCAGTCCCATCAGCAACGTGGACCATTTTGCACACAGAATATCAACCTGCAACTCACAAcagtttcattttttattttcactCAAACACCAAGACGGTATAATCCAAAAGGACACTCGGGTGCAACAAGCAAATATAAATGATGTAATTTAACGATAATCGATCAATAATCAATAGTGACTCCTTCGGGTTATGGGGGAGTCCCCCTTGTTCCTGCTTCCAACCTGCCTCCTGGGTTCTGCAGAGTCTCCCCCTGGCGTAATGTCATTTAGGGAAACCTCATTGGCTGAGGAAGGAGGATAAGTTATTATGGAACACACCACGCACAACAATGAACATCACTTCAGCCGCCACGCCCCCCTGTCTAAATGTTCCAGACGTCACAAAGTCCACCTCAGTATGGCTCAAAAGACAAGGTTAAGATCCAAACCATTTAGGTACACATATTATTTTATTACGTTATACtttatatttgtttttgtttttgttgttgtcccaaTCAAAATAATGATTGTCATcattgaacaaaaaaaaaaaaatgatattacTTGTGCTTGTCACAGTTGTAATCATAATGCCGCCAGGTCCTCTTCCCGTGCCTCTTGTAGCTCTAGTTTGTCTTTCTCCCCATAGGCTACTAAAGAGTTGACCGGAGGTTCAAAGGTCATTGAAAAGGTCACAGGGGTCAGCTTAGTGGAAAACCAatcagaggagaggggtgaaaacCATGCGTTGAAAGGGAAAGTGTCACTGGAGATGAACGCCACCATGCAATATTTATACCTAATCACATCCACCTTCGACACGGTCGGTCAGACTAAGGTCATCTGAGCCAATCACGTCGTCTGTCTtcactgttccctctctctccggtTTTCCAGTCACTTTCTCAtcaagttttttttttgggggggggaggcGGGGAAATGTCTTATTTTGTAATTCAAATGAACATATTCAtgttttctgatatttttttttctccgcctgatgttgttgggtctgtaataGTTTCAGAGAGATGCCATGCTTGGGCTGAATGAACCCTGTTGGCTGTGTGTTAACCGTTGGGAGACTTCCTTAGCCACTGGAAGATCTGGCGTTCGTAGAGACTGTGCCATCTGACGTTGGCCTCCACGATCTCCACGGCCCGGGCCAACGCCGGCCCCGCTCCACCTCCACTGATCTGGG
>TU1948109
CCATTGCTGCTCTGCTCAAAACACAGAACAATATAGTCCCTcatttagaaaaaaaaaacaattttttaatacatcaaaacaacaacaagaaaggAAAAGATGGCGAAGGTCTGAAACTGTTTTCTTCTTGAGGTCTACAGTATCAAGGATTAGCCATAGAGGATATAAATAGCACTGACTTTTACACAGAAAATAAGAGCAATGGACTCCCCAGTAAACCCAATGGGGATTTTCTCTACCAGCCAAGTGTCAACAGTAAAAACTCATTATTATGTTCTATTCTTCATGAAACGAGTCCACAGAGTATATCCAGCTAGCTGTTAGCATCGGCCTGTTAAGTTTACTGGGCTTTGCAGGGTAGCAACAAAACGAGGAATATCTGTCGGGAATATTGTAGAATATTTCCTCTGCTTTTGCTTAAAACACGGGTTTCTGAGTGAAACTTTGTTATGAAGTCATTAGCGGCACATGAAAACCCAAGCATGACGTCTGACCAAAACAACGTAAGTTTCTATATGTCATCATTACTACACCGCGGCTCACACAGGCTGTATCCACTGGCTCTCAGTCCCATCAGCAACGTGGACCATTTTGCACACAGAATATCAACCTGCAACTCACAAcagtttcattttttattttcactCAAACACCAAGACGGTATAATCCAAAAGGACACTCGGGTGCAACAAGCAAATATAAATGATGTAATTTAACGATAATCGATCAATAATCAATAGTGACTCCTTCGGGTTATGGGGGAGTCCCCCTTGTTCCTGCTTCCAACCTGCCTCCTGGGTTCTGCAGAGTCTCCCCCTGGCGTAATGTCATTTAGGGAAACCTCATTGGCTGAGGAAGGAGGATAAGTTATTATGGAACACACCACGCACAACAATGAACATCACTTCAGCCGCCACCCCCCCTGTCTAAATGTTCCAGACGTCACAAAGTCCACCTCAGTATGGCTCAAAAGACAAGGTTAAGATCCAAACCATTTAGGTACACATATTATTTTATTACGTTATACtttatatttgtttttgtttttgttgttgtcccaaTCAAAATAATGATTGTCATcattgaacaaaaaaaaaaaaatgatattacTTGTGCTTGTCACAGTTGTAATCATAATGCCGCCAGGTCCTCTTCCCGTGCCTCTTGTAGCTCTAGTTTGTCTTTCTCCCCATAGGCTACTAAAGAGTTGACCGGAGGTTCAAAGGTCATTGAAAAGGTCACAGGGGTCAGCTTAGTGGAAAACCAatcagaggagaggggtgaaaacCATGCGTTGAAAGGGAAAGTGTCACTGGAGATGAACGCCACCATGCAATATTTATACCTAATCACATCCACCTTCGACACGGTCGGTCAGACTAAGGTCATCTGAGCCAATCACGTCGTCTGTCTtcactgttccctctctctccggtTTTCCAGTCACTTTCTCAtcaagttttttttttgggggggggaggcGGGGAAATGTCTTATTTTGTAATTCAAATGAACATATTCAtgttttctgatatttttttttctccgcctgatgttgttgggtctgtaataGTTTCAGAGAGATGCCATGCTTGGGCTGAATGAACCCTGTTGGCTGTGTGTTAACCGTTGGGAGACTTCCTTAGCCACTGGAAGATCTGGCGTTCGTAGAGACTGTGCCATCTGACGTTGGCCTCCACGATCTCCACGGCCCGGGCCAACGCCGGCCCCGCTCCACCTCCACTGATCTGGG
>TU1948110
CCATTGCTGCTCTGCTCAAAACACAGAACAATATAGTCCCTcatttagaaaaaaaaaacaattttttaatacatcaaaacaacaacaagaaaggAAAAGATGGCGAAGGTCTGAAACTGTTTTCTTCTTGAGGTCTACAGTATCAAGGATTAGCCATAGAGGATATAAATAGCACTGACTTTTACACAGAAAATAAGAGCAATGGACTCCCCAGTAAACCCAATGGGGATTTTCTCTACCAGCCAAGTGTCAACAGTAAAAACTCATTATTATGTTCTATTCTTCATGAAACGAGTCCACAGAGTATATCCAGCTAGCTGTTAGCATCGGCCTGTTAAGTTTACTGGGCTTTGCAGGGTAGCAACAAAACGAGGAATATCTGTCGGGAATATTGTAGAATATTTCCTCTGCTTTTGCTTAAAACACGGGTTTCTGAGTGAAACTTTGTTATGAAGTCATTAGCGGCACATGAAAACCCAAGCATGACGTCTGACCAAAACAACGTAAGTTTCTATATGTCATCATTACTACACCGCGGCTCACACAGGCTGTATCCACTGGCTCTCAGTCCCATCAGCAACGTGGACCATTTTGCACACAGAATATCAACCTGCAACTCACAAcagtttcattttttattttcactCAAACACCAAGACGGTATAATCCAAAAGGACACTCGGGTGCAACAAGCAAATATAAATGATGTAATTTAACGATAATCGATCAATAATCAATAGTGACTCCTTCGGGTTATGGGGGAGTCCCCCTTGTTCCTGCTTCCAACCTGCCTCCTGGGTTCTGCAGAGTCTCCCCCTGGCGTAATGTCATTTAGGGAAACCTCATTGGCTGAGGAAGGAGGATAAGTTATTATGGAACACACCACGCACAACAATGAACATCACTTCAGCCGCCACGCCCCCCTGTCTAAATGTTCCAGACGTCACAAAGTCCACCTCAGTATGGCATCACTTCAGCCGCCACGCCCCCCCCCTGTCTAAATGTTCCAGACGTCACAAAGTCCACCTCAGTATGGCATCACTTCAGCCGCCACGACCCCCCTGTCTAAATGTTCCAGACGTCACAAAGTCCACCTCAGTATGGCTCAAAAGACAAGGTTAAGATCCAAACCATTTAGGTACACATATTATTTTATTACGTTATACtttatatttgtttttgtttttgttgttgtcccaaTCAAAATAATGATTGTCATcattgaacaaaaaaaaaaaaatgatattacTTGTGCTTGTCACAGTTGTAATCATAATGCCGCCAGGTCCTCTTCCCGTGCCTCTTGTAGCTCTAGTTTGTCTTTCTCCCCATAGGCTACTAAAGAGTTGACCGGAGGTTCAAAGGTCATTGAAAAGGTCACAGGGGTCAGCTTAGTGGAAAACCAatcagaggagaggggtgaaaacCATGCGTTGAAAGGGAAAGTGTCACTGGAGATGAACGCCACCATGCAATATTTATACCTAATCACATCCACCTTCGACACGGTCGGTCAGACTAAGGTCATCTGAGCCAATCACGTCGTCTGTCTtcactgttccctctctctccggtTTTCCAGTCACTTTCTCAtcaagttttttttttgggggggggaggcGGGGAAATGTCTTATTTTGTAATTCAAATGAACATATTCAtgttttctgatatttttttttctccgcctgatgttgttgggtctgtaataGTTTCAGAGAGATGCCATGCTTGGGCTGAATGAACCCTGTTGGCTGTGTGTTAACCGTTGGGAGACTTCCTTAGCCACTGGAAGATCTGGCGTTCGTAGAGACTGTGCCATCTGACGTTGGCCTCCACGATCTCCACGGCCCGGGCCAACGCCGGCCCCGCTCCACCTCCACTGATCTGGG
>TU1948111
CCATTGCTGCTCTGCTCAAAACACAGAACAATATAGTCCCTcatttagaaaaaaaaaacaattttttaatacatcaaaacaacaacaagaaaggAAAAGATGGCGAAGGTCTGAAACTGTTTTCTTCTTGAGGTCTACAGTATCAAGGATTAGCCATAGAGGATATAAATAGCACTGACTTTTACACAGAAAATAAGAGCAATGGACTCCCCAGTAAACCCAATGGGGATTTTCTCTACCAGCCAAGTGTCAACAGTAAAAACTCATTATTATGTTCTATTCTTCATGAAACGAGTCCACAGAGTATATCCAGCTAGCTGTTAGCATCGGCCTGTTAAGTTTACTGGGCTTTGCAGGGTAGCAACAAAACGAGGAATATCTGTCGGGAATATTGTAGAATATTTCCTCTGCTTTTGCTTAAAACACGGGTTTCTGAGTGAAACTTTGTTATGAAGTCATTAGCGGCACATGAAAACCCAAGCATGACGTCTGACCAAAACAACGTAAGTTTCTATATGTCATCATTACTACACCGCGGCTCACACAGGCTGTATCCACTGGCTCTCAGTCCCATCAGCAACGTGGACCATTTTGCACACAGAATATCAACCTGCAACTCACAAcagtttcattttttattttcactCAAACACCAAGACGGTATAATCCAAAAGGACACTCGGGTGCAACAAGCAAATATAAATGATGTAATTTAACGATAATCGATCAATAATCAATAGTGACTCCTTCGGGTTATGGGGGAGTCCCCCTTGTTCCTGCTTCCAACCTGCCTCCTGGGTTCTGCAGAGTCTCCCCCTGGCGTAATGTCATTTAGGGAAACCTCATTGGCTGAGGAAGGAGGATAAGTTATTATGGAACACACCACGCACAACAATGAACATCACTTCAGCCGCCACGCCCCCCTGTCTAAATGTTCCAGACGTCACAAAGTCCACCTCAGTATGGCATCACTTCAGCCGCCACGCCCCCCTGTCTAAATGTTCCAGACGTCACAAAGTCCACCTCAGTATGGCTCAAAAGACAAGGTTAAGATCCAAACCATTTAGGTACACATATTATTTTATTACGTTATACtttatatttgtttttgtttttgttgttgtcccaaTCAAAATAATGATTGTCATcattgaacaaaaaaaaaaaaatgatattacTTGTGCTTGTCACAGTTGTAATCATAATGCCGCCAGGTCCTCTTCCCGTGCCTCTTGTAGCTCTAGTTTGTCTTTCTCCCCATAGGCTACTAAAGAGTTGACCGGAGGTTCAAAGGTCATTGAAAAGGTCACAGGGGTCAGCTTAGTGGAAAACCAatcagaggagaggggtgaaaacCATGCGTTGAAAGGGAAAGTGTCACTGGAGATGAACGCCACCATGCAATATTTATACCTAATCACATCCACCTTCGACACGGTCGGTCAGACTAAGGTCATCTGAGCCAATCACGTCGTCTGTCTtcactgttccctctctctccggtTTTCCAGTCACTTTCTCAtcaagttttttttttgggggggggaggcGGGGAAATGTCTTATTTTGTAATTCAAATGAACATATTCAtgttttctgatatttttttttctccgcctgatgttgttgggtctgtaataGTTTCAGAGAGATGCCATGCTTGGGCTGAATGAACCCTGTTGGCTGTGTGTTAACCGTTGGGAGACTTCCTTAGCCACTGGAAGATCTGGCGTTCGTAGAGACTGTGCCATCTGACGTTGGCCTCCACGATCTCCACGGCCCGGGCCAACGCCGGCCCCGCTCCACCTCCACTGATCTGGG
>TU1948112
CCATTGCTGCTCTGCTCAAAACACAGAACAATATAGTCCCTcatttagaaaaaaaaaacaattttttaatacatcaaaacaacaacaagaaaggAAAAGATGGCGAAGGTCTGAAACTGTTTTCTTCTTGAGGTCTACAGTATCAAGGATTAGCCATAGAGGATATAAATAGCACTGACTTTTACACAGAAAATAAGAGCAATGGACTCCCCAGTAAACCCAATGGGGATTTTCTCTACCAGCCAAGTGTCAACAGTAAAAACTCATTATTATGTTCTATTCTTCATGAAACGAGTCCACAGAGTATATCCAGCTAGCTGTTAGCATCGGCCTGTTAAGTTTACTGGGCTTTGCAGGGTAGCAACAAAACGAGGAATATCTGTCGGGAATATTGTAGAATATTTCCTCTGCTTTTGCTTAAAACACGGGTTTCTGAGTGAAACTTTGTTATGAAGTCATTAGCGGCACATGAAAACCCAAGCATGACGTCTGACCAAAACAACGTAAGTTTCTATATGTCATCATTACTACACCGCGGCTCACACAGGCTGTATCCACTGGCTCTCAGTCCCATCAGCAACGTGGACCATTTTGCACACAGAATATCAACCTGCAACTCACAAcagtttcattttttattttcactCAAACACCAAGACGGTATAATCCAAAAGGACACTCGGGTGCAACAAGCAAATATAAATGATGTAATTTAACGATAATCGATCAATAATCAATAGTGACTCCTTCGGGTTATGGGGGAGTCCCCCTTGTTCCTGCTTCCAACCTGCCTCCTGGGTTCTGCAGAGTCTCCCCCTGGCGTAATGTCATTTAGGGAAACCTCATTGGCTGAGGAAGGAGGATAAGTTATTATGGAACACACCACGCACAACAATGAACATCACTTCAGCCGCCACGCCCCCCCCCCTGTCTAAATGTTCCAGACGTCACAAAGTCCACCTCAGTATGGCTCAAAAGACAAGGTTAAGATCCAAACCATTTAGGTACACATATTATTTTATTACGTTATACtttatatttgtttttgtttttgttgttgtcccaaTCAAAATAATGATTGTCATcattgaacaaaaaaaaaaaaatgatattacTTGTGCTTGTCACAGTTGTAATCATAATGCCGCCAGGTCCTCTTCCCGTGCCTCTTGTAGCTCTAGTTTGTCTTTCTCCCCATAGGCTACTAAAGAGTTGACCGGAGGTTCAAAGGTCATTGAAAAGGTCACAGGGGTCAGCTTAGTGGAAAACCAatcagaggagaggggtgaaaacCATGCGTTGAAAGGGAAAGTGTCACTGGAGATGAACGCCACCATGCAATATTTATACCTAATCACATCCACCTTCGACACGGTCGGTCAGACTAAGGTCATCTGAGCCAATCACGTCGTCTGTCTtcactgttccctctctctccggtTTTCCAGTCACTTTCTCAtcaagttttttttttgggggggggaggcGGGGAAATGTCTTATTTTGTAATTCAAATGAACATATTCAtgttttctgatatttttttttctccgcctgatgttgttgggtctgtaataGTTTCAGAGAGATGCCATGCTTGGGCTGAATGAACCCTGTTGGCTGTGTGTTAACCGTTGGGAGACTTCCTTAGCCACTGGAAGATCTGGCGTTCGTAGAGACTGTGCCATCTGACGTTGGCCTCCACGATCTCCACGGCCCGGGCCAACGCCGGCCCCGCTCCACCTCCACTGATCTGGG

Function

NR:

description
thyrotropin-releasing hormone-degrading ectoenzyme-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1948108 False 1754 lncRNA 0.43 2 3235497 3237529
TU1948109 False 1753 lncRNA 0.43 2 3235497 3237529
TU1948110 False 1892 lncRNA 0.44 2 3235497 3237529
TU1948111 False 1821 lncRNA 0.43 3 3235497 3237529
TU1948112 True 1758 lncRNA 0.43 2 3235497 3237529

Neighbor

gene id symbol gene type direction distance location
LOC118942830 NA coding downstream 205029 3029349 ~ 3030468 (-)
LOC110499718 LOC106594636 coding downstream 1012297 2190139 ~ 2223200 (-)
LOC118942828 LOC106594636 coding downstream 1076541 2150983 ~ 2158956 (-)
LOC118942827 NA coding downstream 1085786 2143995 ~ 2149711 (-)
LOC110499714 LOC106609803 coding downstream 1097409 2129033 ~ 2138088 (-)
LOC110499739 grip1 coding upstream 351001 3585864 ~ 4306764 (-)
trnav-uac-23 NA coding upstream 976363 4213892 ~ 4213965 (-)
LOC110499732 dyrk2 coding upstream 1374353 4611882 ~ 4636619 (-)
LOC110516460 LOC106593189 coding upstream 1455354 4692883 ~ 4704523 (-)
LOC118942988 NA coding upstream 1485499 4723028 ~ 4728731 (-)
G1702106 NA non-coding downstream 28528 3206501 ~ 3206969 (-)
G1702072 NA non-coding downstream 125232 3109922 ~ 3110265 (-)
G1702070 NA non-coding downstream 127850 3107221 ~ 3107647 (-)
G1702068 NA non-coding downstream 130064 3103404 ~ 3105433 (-)
G1702039 NA non-coding downstream 190969 3043852 ~ 3044528 (-)
G1702146 NA non-coding upstream 69329 3306858 ~ 3313340 (-)
G1702147 NA non-coding upstream 70132 3307661 ~ 3314262 (-)
G1702174 NA non-coding upstream 153621 3391150 ~ 3438393 (-)
G1702200 NA non-coding upstream 223783 3461312 ~ 3461758 (-)
G1702201 NA non-coding upstream 227849 3465378 ~ 3467039 (-)
G1702117 NA other downstream 5456 3229002 ~ 3230041 (-)
G1701930 NA other downstream 405915 2783942 ~ 2829582 (-)
G1701824 NA other downstream 660236 2572603 ~ 2577051 (-)
G1701041 NA other downstream 1045831 2188433 ~ 2189666 (-)
LOC110512520 LOC106609724 other downstream 1111610 2113042 ~ 2128710 (-)
G1702141 NA other upstream 43573 3281102 ~ 3518377 (-)
G1702914 NA other upstream 1204720 4442249 ~ 4444919 (-)
LOC118936570 mdm1 other upstream 1694685 4932214 ~ 4970391 (-)
G1703085 NA other upstream 1709069 4946598 ~ 4947411 (-)

Expression


Co-expression Network