G1701440


Basic Information

Item Value
gene id G1701440
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 3275150 ~ 3276857 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1947221
tctctctctctctctctgtctctctctctgtatctctctgtctctctctctctctctctgtctctctctctctctgtctctctctctgtctctctctctgtctctctctctctgtctctctctctccctgtctctctctctgtctctcactctgtctctctctatctgtctctctctctctgtctatctctctctctgtctctctctctctctctctgtcgctatctctgtctctctctctctctctctgtctctctctgtctctctctctgtctctctctctgtctctctctctgtctctctctctctgtctccctctctgtctctctctctctctgtctctctctctgtctctctctctctctgtctctctctctgtctctctctctctctctctctctgtctctctctgtctctctctctgtctctctctctgtctctctctctctgtctctctctctgtctctctctctctctctgtctctctctctctctctgtctctctctctctgtctctctctctgtctctctctctgtctctctctcactgtctctctctctgtctctctctctgtctctctctctgtctctctcgctctgtctctctgtgtctctctctctctctgtctctctctctctctgtctctctctctgtatctctctgtctctctctctctctctctgtctctctctctctctgtctctctctctgtctctctctctgtctctctctctctgtctctctctctctctgtctctctctctgtctctcactctgtctctctctctatctgtctctctctctctgtctttctctctctctgtctctctctctctctctctctctgtcgctatctctgtctctctctctctctctctgtctctctctgtctctctctctgtctctctctctgtctctctctctctctctctctctctctgtctccctctctgtctctctctctctctgtctctctctctgtctctctctctgtctctctctgtctctctctgtctctctctctgtctctctctctgtctctctctctgtctctctctctgtctctctctctctctctgtctctctctctctgtctctctctctgtctctctctctgtctctctctcactgtctctctctctgtctctctctctgtctctctctctgtctctctctctgtctctctcgctctgtctctctgtgtctctctctctctctgtctctctctctctctgtctctctctctgtatctctctgtctctctctctctctctctgtctctctctctctctctctctctctctctgtctctctctctgtctctctctctctgtctctctctctctctgtctctctctctgtctctcactctgtctctctctctgtctctctctatctgtctctctctctctgtctttctctctctctgtctctctctctctctctgtcgctatctctgtctctctctctctctc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1947221 True 1476 lncRNA 0.50 2 3275150 3276857

Neighbor

gene id symbol gene type direction distance location
LOC110499725 trhde coding upstream 37578 2819887 ~ 3237572 (+)
LOC118942987 NA coding upstream 543337 2730641 ~ 2731813 (+)
LOC110519348 tbc1d15 coding upstream 607872 2588642 ~ 2667278 (+)
LOC110519746 LOC106597902 coding upstream 694691 2579232 ~ 2580459 (+)
LOC110500958 LOC106609839 coding upstream 699968 2541008 ~ 2575182 (+)
LOC110516257 LOC106590998 coding downstream 108599 3385456 ~ 3391594 (+)
irak3 irak3 coding downstream 266795 3543652 ~ 3562592 (+)
helb LOC106599032 coding downstream 288782 3565639 ~ 3583498 (+)
LOC110516816 LOC107655592 coding downstream 1107159 4384016 ~ 4441236 (+)
si:dkey-39a18.1 LOC106576636 coding downstream 1174259 4451116 ~ 4475091 (+)
G1701429 NA non-coding upstream 30788 3242802 ~ 3244362 (+)
G1701421 NA non-coding upstream 46590 3228223 ~ 3228560 (+)
G1701418 NA non-coding upstream 50107 3224132 ~ 3225043 (+)
G1701399 NA non-coding upstream 106330 3164081 ~ 3168820 (+)
G1701398 NA non-coding upstream 107965 3163523 ~ 3167185 (+)
G1701449 NA non-coding downstream 29572 3306429 ~ 3306737 (+)
G1701451 NA non-coding downstream 30710 3307567 ~ 3308860 (+)
G1701456 NA non-coding downstream 52962 3329819 ~ 3330124 (+)
G1701474 NA non-coding downstream 98110 3374967 ~ 3377350 (+)
G1701498 NA non-coding downstream 156542 3433399 ~ 3433867 (+)
G1701265 NA other upstream 425547 2844704 ~ 2849603 (+)
G1699934 NA other upstream 1405596 1867694 ~ 1869554 (+)
LOC110499743 cnot2 other upstream 1505873 1688942 ~ 1769720 (+)
LOC110500915 LOC106576535 other upstream 1605930 1607414 ~ 1669220 (+)
G1701596 NA other downstream 497182 3774039 ~ 3776261 (+)
G1701654 NA other downstream 655930 3932787 ~ 3936037 (+)
G1702554 NA other downstream 1118136 4394993 ~ 4395515 (+)
G1702793 NA other downstream 1775590 5052447 ~ 5054464 (+)

Expression


Co-expression Network