G1702944


Basic Information

Item Value
gene id G1702944
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 4534067 ~ 4537707 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1949267
cctcaggttaactctctatcccaggcatatataatgacatctgtctcctcaggttaactctctcctctctatcccagtcatatataatgacatctgtctcctcaggttaactctctcctctctatcccagtcatatataatgacatctgtctcctcaggttaactctctatcccagtcatatataatgacatctgtctcctcaggttatctttctcctctctatcccagtcatatataatgacatctgtctcctcaggttaactctctatcccagtcatatataatgacatctgtctcctcaggttaactctctcctctctatcccagtcatatataatgacatctgtctcctcaggttaactctctcctctctatcccagtcatatataatgacatctgtctcctcaggttaactctctatcccagtcatatataatgacatctgtctcctcaggttaactctctcctctctatcccagtcatatataatgacatctgtctcctcaggttaactctctcctctctatcccagtcatatataatgacatctcctcaggttaactctctaTCCCAGGTGTATAGTGTGTGTCAGGTCATACATGTATTTGATACTGATGTCATCACAACACCatggaagaggatgatgtcatcacaacactatggaagaggatgatgtcatcacaacaccatggaagaggatgatgtcatcacaacaccatggaagaggatgatgtcatcacaacaccatggaaggggatgatgtcatcacaacactatggaagaggatgatgtcatcacaacaccatggaagaggatgatgtcatcacaacaccatggaagaggatgatgtcatcacaacaccatggaagaggatgatgtcatcacaacaccatggaagaggatgatgtcatcacaacaccatggaagaggatgatgtcatcacaacactatggaagaggatgatgtcatcacaacaccatggaagaggatgatgtcatcacaacaccatggaagaggatgatgtcatcacaacaccatggaagaggatgatgtcatcacaacaccatggaagaggatgat
>TU1949269
cctcaggttaactctctatcccaggcatatataatgacatctgtctcctcaggttaactctctcctctctatcccagtcatatataatgacatctgtctcctcaggttaactctctcctctctatcccagtcatatataatgacatctgtctcctcaggttaactctctatcccagtcatatataatgacatctgtctcctcaggttatctttctcctctctatcccagtcatatataatgacatctgtctcctcaggttaactctctatcccagtcatatataatgacatctgtctcctcaggttaactctctcctctctatcccagtcatatataatgacatctgtctcctcaggttaactctctcctctctatcccagtcatatataatgacatctgtctcctcaggttaactctctcctctctatcccagtcatatataatgacatctgtctcctcaggttaactctctatcccagtcatatataatgacatctgtctcctcaggttatctctctatcccagtcatatataatgacatctgtctcctcaggttaactctctatcccagtcatatataatgacatctgtctcctcaggttaactctctatcccagtcatatataatgacatctgtctcctcaggttaactctctaTCCCAATCATATATAATGccatctgtctcctcaggttaactctctatcccagtcatatataatgacatctgtctcctcaggttaactctctatcccagtcatatataatgacatctgtctcctcaggttaactctctcctctctatcccagtcatatataatgacatctgtctcctcaggttaactctctcctctctatcccagtcatatataatgacatctgtctcctcaggttaactctctatcccagtcatatataatgacatctgtctcctcaggttaactctctatcccagtcatatataatgacatctgtctcctcaggttaactctctcctctctatcccagtcatatataatgacatctcctcaggttaactctctaTCCCAGGTGTATAGTGTGTGTCAGGTCATACATGTATTTGATACTGATGTCATCACAACACCatggaagaggatgatgtcatcacaacactatggaagaggatgatgtcatcacaacaccatggaagaggatgatgtcatcacaacaccatggaagaggatgatgtcatcacaacaccatggaaggggatgatgtcatcacaacactatggaagaggatgatgtcatcacaacaccatggaagaggatgatgtcatcacaacaccatggaagaggatgatgtcatcacaacaccatggaagaggatgatgtcatcacaacaccatggaagaggatgatgtcatcacaacaccatggaagaggatgatgtcatcacaacactatggaagaggatgatgtcatcacaacaccatggaagaggatgatgtcatcacaacaccatggaagaggatgatgtcatcacaacaccatggaagaggatgatgtcatcacaacaccatggaagaggatgat

Function

NR:

description
PREDICTED: proline-rich extensin-like protein EPR1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1949267 False 1081 lncRNA 0.42 3 4534067 4537707
TU1949269 True 1555 lncRNA 0.41 5 4534067 4537707

Neighbor

gene id symbol gene type direction distance location
LOC110499739 grip1 coding downstream 227303 3585864 ~ 4306764 (-)
trnav-uac-23 NA coding downstream 320102 4213892 ~ 4213965 (-)
LOC118942830 NA coding downstream 1503599 3029349 ~ 3030468 (-)
LOC110499718 LOC106594636 coding downstream 2310867 2190139 ~ 2223200 (-)
LOC118942828 LOC106594636 coding downstream 2375111 2150983 ~ 2158956 (-)
LOC110499732 dyrk2 coding upstream 74175 4611882 ~ 4636619 (-)
LOC110516460 LOC106593189 coding upstream 155176 4692883 ~ 4704523 (-)
LOC118942988 NA coding upstream 185321 4723028 ~ 4728731 (-)
ifng ifngamma1 coding upstream 219046 4756753 ~ 4778081 (-)
LOC118936570 mdm1 coding upstream 394509 4932214 ~ 4970391 (-)
G1702942 NA non-coding downstream 3237 4528767 ~ 4530830 (-)
G1702941 NA non-coding downstream 11104 4522443 ~ 4522963 (-)
G1702932 NA non-coding downstream 43875 4489948 ~ 4490192 (-)
G1702917 NA non-coding downstream 85225 4448001 ~ 4448842 (-)
G1702916 NA non-coding downstream 87093 4446477 ~ 4446974 (-)
G1702949 NA non-coding upstream 11488 4549195 ~ 4549685 (-)
G1702955 NA non-coding upstream 28051 4565758 ~ 4611286 (-)
G1702956 NA non-coding upstream 33381 4571088 ~ 4571844 (-)
G1702957 NA non-coding upstream 35016 4572723 ~ 4574498 (-)
G1702964 NA non-coding upstream 60170 4597877 ~ 4600067 (-)
G1702914 NA other downstream 89148 4442249 ~ 4444919 (-)
G1702141 NA other downstream 1015690 3281102 ~ 3518377 (-)
G1702117 NA other downstream 1304026 3229002 ~ 3230041 (-)
G1701930 NA other downstream 1704485 2783942 ~ 2829582 (-)
G1703085 NA other upstream 408891 4946598 ~ 4947411 (-)
G1703190 NA other upstream 663120 5200387 ~ 5202057 (-)
G1703200 NA other upstream 694928 5232635 ~ 5235225 (-)
LOC118942834 LOC106576655 other upstream 699701 5236240 ~ 5313033 (-)

Expression


Co-expression Network