G1702594


Basic Information

Item Value
gene id G1702594
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 4605061 ~ 4607007 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1948755
AAGATGGACCTTAAAACTTTTTTATTTAATAACATTTTCCCGGCCACAACAATAAAATTTAACAAATAATCACAAAAAAAAGTGTGACCTTCCATTAGCTGTACATTACATACACTATAGTAAAACTGACCGAGCTTAAAAACCCACTACAACATTCATGTAGTGCTTCCAGCAGCATTTCACCAGAGGCAAAGACATTATACATATGTACACAAATCCACATTGAACCCATCGCAAATTTCACATATGTACAGCGTACGTGGCTGTGGTAAAGAGTACTAACATCTATCAACGTTGTTGCTCGGTTCAagattctgtttttttttttttaacttcctTCTTCTAAAAGTTGTGTAGTAGTAACTCTAGAGACTGTCTTCTAAAAGTTGTGTAGTAGTAACTCTAGAGACTGTCTTCTAAAAGTTGTGTAGTAGTAACTCTAGAGACTGTCTTCTAAAAGTTGTGTAGTAGAACTCTAGAGACTGTCTTCTAAAAGTTGTGTAGTAGTAACTCTAGAGACTGTCTTCTAAAAGTTGTGTAGTAGAACTCTCGAGACTGTCTTCTAAAAGTTGTATAGTAGAACTCTAGAGACTGTCTTCTAAAAGTTGTGTAGTAGAACTCTAGAGACTGTCTTCTAAAAGTTGTGTAGTAGAGCTCTAGAGACTGTCTTCTAAAAGTTGTGTAGTAGAACTCTAGAGACTGTCTTCTAAAAGTTGTGTAGTAGAACTCTCGAGACTGTCTTCTAAAAGTTGTATAGTAGAACTCTAGAGACTGTCTTCTAAAAGTTGTGTAGTAGAGCTCTAGAGACTGTCTTCTAAAAGTTGTGTAGTTGAACTCTAGAGACTGTCTTCTAAAAGTTGTGTAGTAGTAACTCTAGAGACTGTCTTCTAAAAGTTGTGTAGTAGAGCTCTAGAGACTGTCTTCTAAAAGTTGTATAGTAGAACTCTAGAGACTGTCTTCTAAAAGTTGTGTAGTAGTAACTCTAGAGACTGTCTTCTAAAAGTTGTGTAGTAGTAACTCTAGAGACTGTCTTCTAAAAGTTGTGTAGTAGAGCTCTAGAGACTGTCTTCTAAAAGTTGTGTAGTAGAACTCTAGAGACTGTCTTCTAAAAGTTGTGTAGTAGAGCTCTAGAGACTGTCTTCTAAAAGTTGTGTAGTAGAGCTCTAGAGACTGTCTTCTAAAAGTTGTGTAGTTGAACTCTAGAGACTGTCTTCTAAAAGTTGTGTAGTAGAGCTCTAGAGACTGTCTTCTAAAAGTTGTGCAGTTGAACTCTAGAGACTGTCTTCTAAAAGTTGTGTAGTAGAACTCTAGAGACTGTCTTCTAAAAGTTGTGTAGTAGAGCTCTAGAGACTGTCTTCTAAAAGTTGTGTAGTTGAACTCTAGAGACTGTCTTCTAAAAGTTGTGTAGTAGAGCTCTAGAGACTGTCTTCTAAAAGTTGTGTAGTAGAGCTCTAGAGACTGTCTTCTAAAAGTTGTGTAGTAGAACTCTAGAGACTGTCTTCTAAAAGTTGTGTAGTAGAACTCTAGAGACTGTCTTCTAAAAGTTGTGTAGTAGAACTCTAGAGACTGTCTTCTAAAAGTTGTGTAGTTGAACTCTAGAGACTGTCTTCTAAAAGTTGTGTAGTAGAACTCTAGAGACTGTCTTCTAAAAGTTGTGTAGTAGAGCTCTCGAGACTGTCTTCTAAAAGTTGTGTAGTAGAACTCTAGAGACTGTCTTCTAAAAGTTGTGTAGTAGAACTCTAGAGACTGTCTTCTAAAAGTTGTGTAGTAGAACTCTAGAGACTGTCTTCTAAAAGTTGTGTAGTAGAACTCTAGAGACTGTCTTCTAAAAGTTGTGTAGTTGAACTCTAGAGACTGTCTTCTAAAAGTTGTGT
>TU1948756
AAGATGGACCTTAAAACTTTTTTATTTAATAACATTTTCCCGGCCACAACAATAAAATTTAACAAATAATCACAAAAAAAAGTGTGACCTTCCATTAGCTGTACATTACATACACTATAGTAAAACTGACCGAGCTTAAAAACCCACTACAACATTCATGTAGTGCTTCCAGCAGCATTTCACCAGAGGCAAAGACATTATACATATGTACACAAATCCACATTGAACCCATCGCAAATTTCACATATGTACAGCGTACGTGGCTGTGGTAAAGAGTACTAACATCTATCAACGTTGTTGCTCGGTTCAagattctgtttttttttttttaacttcctTCTTCTAAAAGTTGTGTAGTAGTAACTCTAGAGACTGTCTTCTAAAAGTTGTGTAGTAGTAACTCTAGAGACTGTCTTCTAAAAGTTGTGTAGTAGTAACTCTAGAGACTGTCTTCTAAAAGTTGTGTAGTAGAACTCTAGAGACTGTCTTCTAAAAGTTGTGTAGTAGTAACTCTAGAGACTGTCTTCTAAAAGTTGTGTAGTAGAACTCTCGAGACTGTCTTCTAAAAGTTGTATAGTAGAACTCTAGAGACTGTCTTCTAAAAGTTGTGTAGTAGAACTCTAGAGACTGTCTTCTAAAAGTTGTGTAGTAGAGCTCTAGAGACTGTCTTCTAAAAGTTGTGTAGTAGAACTCTAGAGACTGTCTTCTAAAAGTTGTGTAGTAGAACTCTCGAGACTGTCTTCTAAAAGTTGTATAGTAGAACTCTAGAGACTGTCTTCTAAAAGTTGTGTAGTAGAGCTCTAGAGACTGTCTTCTAAAAGTTGTGTAGTTGAACTCTAGAGACTGTCTTCTAAAAGTTGTGTAGTAGTAACTCTAGAGACTGTCTTCTAAAAGTTGTGTAGTAGAGCTCTAGAGACTGTCTTCTAAAAGTTGTATAGTAGAACTCTAGAGACTGTCTTCTAAAAGTTGTGTAGTAGTAACTCTAGAGACTGTCTTCTAAAAGTTGTGTAGTAGTAACTCTAGAGACTGTCTTCTAAAAGTTGTGTAGTTGAACTCTAGAGACTGTCTTCTAAAAGTTGTGTAGTAGAACTCTAGAGACTGTCTTCTAAAAGTTGTGTAGTAGAGCTCTCGAGACTGTCTTCTAAAAGTTGTGTAGTAGAACTCTAGAGACTGTCTTCTAAAAGTTGTGTAGTAGAACTCTAGAGACTGTCTTCTAAAAGTTGTGTAGTAGAACTCTAGAGACTGTCTTCTAAAAGTTGTGTAGTAGAACTCTAGAGACTGTCTTCTAAAAGTTGTGTAGTTGAACTCTAGAGACTGTCTTCTAAAAGTTGTGT
>TU1948757
AAGATGGACCTTAAAACTTTTTTATTTAATAACATTTTCCCGGCCACAACAATAAAATTTAACAAATAATCACAAAAAAAAGTGTGACCTTCCATTAGCTGTACATTACATACACTATAGTAAAACTGACCGAGCTTAAAAACCCACTACAACATTCATGTAGTGCTTCCAGCAGCATTTCACCAGAGGCAAAGACATTATACATATGTACACAAATCCACATTGAACCCATCGCAAATTTCACATATGTACAGCGTACGTGGCTGTGGTAAAGAGTACTAACATCTATCAACGTTGTTGCTCGGTTCAagattctgtttttttttttttaacttcctTCTTCTAAAAGTTGTGTAGTAGTAACTCTAGAGACTGTCTTCTAAAAGTTGTGTAGTAGTAACTCTAGAGACTGTCTTCTAAAAGTTGTGTAGTAGTAACTCTAGAGACTGTCTTCTAAAAGTTGTGTAGTAGAACTCTAGAGACTGTCTTCTAAAAGTTGTGTAGTAGTAACTCTAGAGACTGTCTTCTAAAAGTTGTGTAGTAGAACTCTCGAGACTGTCTTCTAAAAGTTGTATAGTAGAACTCTAGAGACTGTCTTCTAAAAGTTGTGTAGTAGAACTCTAGAGACTGTCTTCTAAAAGTTGTGTAGTAGAGCTCTAGAGACTGTCTTCTAAAAGTTGTGTAGTAGAACTCTAGAGACTGTCTTCTAAAAGTTGTGTAGTAGAACTCTCGAGACAGTCTTCTAAAAGTTGTGTAGTAGTAACTCTAGAGACTGTCTTCTAAAAGTTGTGTAGTAGAGCTCTAGAGACTGTCTTCTAAAAGTTGTGTAGTAGAACTCTAGAGACTGTCTTCTAAAAGTTGTGTAGTAGAGCTCTAGAGACTGTCTTCTAAAAGTTGTGTAGTAGAGCTCTAGAGACTGTCTTCTAAAAGTTGTGTAGTTGAACTCTAGAGACTGTCTTCTAAAAGTTGTGTAGTAGAGCTCTAGAGACTGTCTTCTAAAAGTTGTGCAGTTGAACTCTAGAGACTGTCTTCTAAAAGTTGTGTAGTAGAACTCTAGAGACTGTCTTCTAAAAGTTGTGTAGTAGAGCTCTAGAGACTGTCTTCTAAAAGTTGTGTAGTTGAACTCTAGAGACTGTCTTCTAAAAGTTGTGTAGTAGAGCTCTAGAGACTGTCTTCTAAAAGTTGTGTAGTAGAGCTCTAGAGACTGTCTTCTAAAAGTTGTGTAGTAGAACTCTAGAGACTGTCTTCTAAAAGTTGTGTAGTAGAACTCTAGAGACTGTCTTCTAAAAGTTGTGTAGTAGAACTCTAGAGACTGTCTTCTAAAAGTTGTGTAGTTGAACTCTAGAGACTGTCTTCTAAAAGTTGTGTAGTAGAACTCTAGAGACTGTCTTCTAAAAGTTGTGTAGTAGAGCTCTCGAGACTGTCTTCTAAAAGTTGTGTAGTAGAACTCTAGAGACTGTCTTCTAAAAGTTGTGTAGTAGAACTCTAGAGACTGTCTTCTAAAAGTTGTGTAGTAGAACTCTAGAGACTGTCTTCTAAAAGTTGTGTAGTAGAACTCTAGAGACTGTCTTCTAAAAGTTGTGTAGTTGAACTCTAGAGACTGTCTTCTAAAAGTTGTGT

Function

NR:

description
PREDICTED: trichohyalin-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1948755 False 1874 lncRNA 0.36 2 4605061 4607007
TU1948756 False 1334 lncRNA 0.36 2 4605061 4607007
TU1948757 True 1620 lncRNA 0.36 2 4605061 4607007

Neighbor

gene id symbol gene type direction distance location
si:dkey-39a18.1 LOC106576636 coding upstream 129970 4451116 ~ 4475091 (+)
LOC118942831 LOC106576636 coding upstream 143490 4459746 ~ 4461571 (+)
LOC110516816 LOC107655592 coding upstream 163825 4384016 ~ 4441236 (+)
helb LOC106599032 coding upstream 1021563 3565639 ~ 3583498 (+)
irak3 irak3 coding upstream 1042469 3543652 ~ 3562592 (+)
LOC118942787 LOC106594295 coding downstream 244982 4851989 ~ 4852917 (+)
LOC118936571 rap1b coding downstream 391219 4998226 ~ 5111935 (+)
LOC110490690 nu107 coding downstream 513113 5120120 ~ 5173429 (+)
LOC118942832 LOC106576641 coding downstream 566653 5173660 ~ 5179939 (+)
LOC118942833 NA coding downstream 568488 5175495 ~ 5176684 (+)
G1702618 NA non-coding upstream 28232 4576359 ~ 4576829 (+)
G1702608 NA non-coding upstream 54959 4549755 ~ 4550102 (+)
G1702593 NA non-coding upstream 86052 4518788 ~ 4519009 (+)
G1702591 NA non-coding upstream 92591 4512264 ~ 4512470 (+)
G1702587 NA non-coding upstream 98175 4506542 ~ 4506886 (+)
G1702632 NA non-coding downstream 15856 4622863 ~ 4623198 (+)
G1702636 LOC106576541 non-coding downstream 19834 4626841 ~ 4627627 (+)
G1702643 NA non-coding downstream 40037 4647044 ~ 4647549 (+)
G1702644 NA non-coding downstream 42415 4649422 ~ 4649636 (+)
G1702645 NA non-coding downstream 44156 4651163 ~ 4651373 (+)
G1702554 NA other upstream 209546 4394993 ~ 4395515 (+)
G1701654 NA other upstream 669024 3932787 ~ 3936037 (+)
G1701596 NA other upstream 828800 3774039 ~ 3776261 (+)
G1701265 NA other upstream 1755458 2844704 ~ 2849603 (+)
G1702793 NA other downstream 445440 5052447 ~ 5054464 (+)
LOC110516940 LOC106609861 other downstream 577467 5182911 ~ 5200193 (+)
G1702856 NA other downstream 647158 5254165 ~ 5254885 (+)
LOC110511233 LOC107655547 other downstream 978524 5563222 ~ 5598052 (+)
G1703391 NA other downstream 1110192 5717199 ~ 5717701 (+)

Expression


Co-expression Network