G1702636 (LOC106576541)


Basic Information

Item Value
gene id G1702636
gene name LOC106576541
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 4626841 ~ 4627627 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1948814
TTCTCATATAGAGCCGATGGGCTTTGGTCACAGATagggcactagatagggaatagggggccgttTGGGAGGAGGAGAGCTGTGTTTTGCTCCCAGCGTTGTGTTCCACTAAGAGGCCTTGCTTCGccacctctctgtactgtagagGTTCTAGTTCCGGAACAGATGTCTACAccacctctctgtactgtagagGTTCTGGTTCCGGAACAGATGTCTACAccacctctctgtactgtagagGTTCTGGTTCCGCAACAGATGTGTTTGTGTCAACACTAATGAGGTTAGTTCAGGTCGGGACAAACAGGAGAAGAAACAGAACAGTCAATAACTGAGTGGACAGAGAGCTAGCAACCTT

Function

NR:

description
PREDICTED: proteoglycan 4-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1948814 True 361 lncRNA 0.49 2 4626841 4627627

Neighbor

gene id symbol gene type direction distance location
si:dkey-39a18.1 LOC106576636 coding upstream 151750 4451116 ~ 4475091 (+)
LOC118942831 LOC106576636 coding upstream 165270 4459746 ~ 4461571 (+)
LOC110516816 LOC107655592 coding upstream 185605 4384016 ~ 4441236 (+)
helb LOC106599032 coding upstream 1043343 3565639 ~ 3583498 (+)
irak3 irak3 coding upstream 1064249 3543652 ~ 3562592 (+)
LOC118942787 LOC106594295 coding downstream 224362 4851989 ~ 4852917 (+)
LOC118936571 rap1b coding downstream 370599 4998226 ~ 5111935 (+)
LOC110490690 nu107 coding downstream 492493 5120120 ~ 5173429 (+)
LOC118942832 LOC106576641 coding downstream 546033 5173660 ~ 5179939 (+)
LOC118942833 NA coding downstream 547868 5175495 ~ 5176684 (+)
G1702632 NA non-coding upstream 3643 4622863 ~ 4623198 (+)
G1702594 NA non-coding upstream 19834 4605061 ~ 4607007 (+)
G1702618 NA non-coding upstream 50012 4576359 ~ 4576829 (+)
G1702608 NA non-coding upstream 76739 4549755 ~ 4550102 (+)
G1702593 NA non-coding upstream 107832 4518788 ~ 4519009 (+)
G1702643 NA non-coding downstream 19417 4647044 ~ 4647549 (+)
G1702644 NA non-coding downstream 21795 4649422 ~ 4649636 (+)
G1702645 NA non-coding downstream 23536 4651163 ~ 4651373 (+)
G1702646 NA non-coding downstream 24588 4652215 ~ 4652621 (+)
G1702648 NA non-coding downstream 30382 4658009 ~ 4658378 (+)
G1702554 NA other upstream 231326 4394993 ~ 4395515 (+)
G1701654 NA other upstream 690804 3932787 ~ 3936037 (+)
G1701596 NA other upstream 850580 3774039 ~ 3776261 (+)
G1701265 NA other upstream 1777238 2844704 ~ 2849603 (+)
G1702793 NA other downstream 424820 5052447 ~ 5054464 (+)
LOC110516940 LOC106609861 other downstream 556847 5182911 ~ 5200193 (+)
G1702856 NA other downstream 626538 5254165 ~ 5254885 (+)
LOC110511233 LOC107655547 other downstream 957904 5563222 ~ 5598052 (+)
G1703391 NA other downstream 1089572 5717199 ~ 5717701 (+)

Expression


Co-expression Network