G1702646


Basic Information

Item Value
gene id G1702646
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 4652215 ~ 4652621 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1948826
atatatacactggacTAGAGATAGAAGACTGGATGCTATAGAATGTgtagaatcactatatatatacactggacTAGAGATAGAAAGACTGAGCACATCATATGTGTCCAGTTTATATCTCCTCATCTCCTGTATGAGTTCAGACAGACTGCTATCAGTTTATCattcatctcctcatctcctgtaTGAGTTCAGACAGACAGCTATCAGTTTATCATTCATCTCCTGTATGAGTTCAGACAGACTACTCTCAGTTTATCATTCAACTCCTGTATGAGTTCAGACAGACAGCTATCAGTTTATCATTTAACTACTCGTCTCCTGTATGAGTTCAGACAGACAGCTATCAGTTTATCATTTAACTACTCGTCTCCTGTATGagttcagacagacagctctCGGTACAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1948826 True 407 lncRNA 0.39 1 4652215 4652621

Neighbor

gene id symbol gene type direction distance location
si:dkey-39a18.1 LOC106576636 coding upstream 177124 4451116 ~ 4475091 (+)
LOC118942831 LOC106576636 coding upstream 190644 4459746 ~ 4461571 (+)
LOC110516816 LOC107655592 coding upstream 210979 4384016 ~ 4441236 (+)
helb LOC106599032 coding upstream 1068717 3565639 ~ 3583498 (+)
irak3 irak3 coding upstream 1089623 3543652 ~ 3562592 (+)
LOC118942787 LOC106594295 coding downstream 199368 4851989 ~ 4852917 (+)
LOC118936571 rap1b coding downstream 345605 4998226 ~ 5111935 (+)
LOC110490690 nu107 coding downstream 467499 5120120 ~ 5173429 (+)
LOC118942832 LOC106576641 coding downstream 521039 5173660 ~ 5179939 (+)
LOC118942833 NA coding downstream 522874 5175495 ~ 5176684 (+)
G1702645 NA non-coding upstream 842 4651163 ~ 4651373 (+)
G1702644 NA non-coding upstream 2579 4649422 ~ 4649636 (+)
G1702643 NA non-coding upstream 4666 4647044 ~ 4647549 (+)
G1702636 LOC106576541 non-coding upstream 24588 4626841 ~ 4627627 (+)
G1702632 NA non-coding upstream 29017 4622863 ~ 4623198 (+)
G1702648 NA non-coding downstream 5388 4658009 ~ 4658378 (+)
G1702655 NA non-coding downstream 21349 4673970 ~ 4675027 (+)
G1702659 NA non-coding downstream 37218 4689839 ~ 4690190 (+)
G1702660 NA non-coding downstream 38975 4691596 ~ 4698714 (+)
G1702666 NA non-coding downstream 75381 4728002 ~ 4728236 (+)
G1702554 NA other upstream 256700 4394993 ~ 4395515 (+)
G1701654 NA other upstream 716178 3932787 ~ 3936037 (+)
G1701596 NA other upstream 875954 3774039 ~ 3776261 (+)
G1701265 NA other upstream 1802612 2844704 ~ 2849603 (+)
G1702793 NA other downstream 399826 5052447 ~ 5054464 (+)
LOC110516940 LOC106609861 other downstream 531853 5182911 ~ 5200193 (+)
G1702856 NA other downstream 601544 5254165 ~ 5254885 (+)
LOC110511233 LOC107655547 other downstream 932910 5563222 ~ 5598052 (+)
G1703391 NA other downstream 1064578 5717199 ~ 5717701 (+)

Expression


Co-expression Network