XLOC_036422 (emilin3a)


Basic Information

Item Value
gene id XLOC_036422
gene name emilin3a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 22962690 ~ 22965214 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00071195
ATGTTAACTGCCCTGATTTCTGCAGCACCCAGCCCTATCTCTGCTCCTTCCTTGTCTAGAGACTCTACTGTGGGCTTTGGAGATCTACCTGGAGGTGCACCGGATATTGAGGGATCAGATGTGGTGGGACACTTTCCAAACTTGGTCGATTTAACTGAAAAGGTTACAGAGCTGCGAGCAGAACTTGTGGCAAAGTCATCTGAGCTGGAAAAATTGAGAGGAGCAGTTGTGAGTCAAAACACCACCCTTCAAAGACTATCAGGTGGGTCAGTGAACCTTAATCAAACTGAAATCCAAAAGGCCCTGGAAACAATGGTGGAGTCCAAAATGAGTGAAGCTCGGGTCACCATATTAGATGGCTTTGAAAAACGAGTGGAAAGTGCAGAGGAGCGATGCGAGAGTCGAATGGCAGAGGTGCGACTCCAATGCAAAGAGGAAAGTTTAGATGGACAAGATCAGATTGAGCAAGTCCTAGACATAAGGGCTGAAAGATTGAGGGCAGAACTACAAAAGCTGCAGGCTCAGCTTCAAGACCTGGAGCCTGAAGAGGGTTGCTGCATTGCCATATCAGGTCTAACTGAAAGGGTCATTTATATGGAGCAGTCAGTGGAAGGTTTGAATGAATCCCAAACACACCTACGTGCTGAAATTGGTGGACACAAGGACCATATAGATGGCATGTTGGAAGGCCGACTGGCTTATGTGGAATCCAAATTGAATATTGCATTCAATCAAGAGGAAACAAACATTAACAAAAGTGAGCCTGATAACCTGGAGGTGCAATTGGAAGGGAAGATTAAAGCTCTTGAAACCCGTCTCTTGGCAGCAGTAGAAGAGCTCGGTAATGTCACAGCACCAACTTTACTCGAAGGTCAAGCTGTTCCTTCACTGGAAACAGAGGTAGAATTGTTAAGAAGAAGAGTTGAGGATGATTTGGACCATCTACAGAAACAGCTCAAATCCATGGAGGTTCTTTGTACTTCAGCTTGTGTTCCACAGCCTGTTCTAACAGGATATGCAGCTCCATTGGCTACCGATGAGGACAAACACGAAGACAACCTTAAAGAAATGAATGAGAAACTTGATTTACAAGTGCAGAAATTAAACAACCTCAATGCCACTCTATATAATCTTCTTGTACAGTTAGCAAAGAAACAGGAGGAGGTGGATCTTCAAGGAGAGGTGACCCTACTTAAGGTCACTGTGAACTCTGTTAACAGGTCTATCTGTGGCTTGCAAGACTCTCTTGGCTCTGTGATCAAAGAGGTCGGCCACACCAACCTTACCTGGCAGGAAAGAGAGGAAAGGCTTGCCCAGCAGGTAAAAGGAGTGGTTCAGCTGGTGGGACGACAAGCTTCCATGTTGGGTACTGGGGAGCGAAAGCTGACCCGTCTGAAGGGGGAACTCCACGATCTGCGACGTAAAGTTGCTGGAGAGCTACAGGGTTGCCGCTCCACTGCCCTCGGTGTCCAGAAGGAAGTGACCGAAGTCGGAGGTCGTGTTGCCCGTGTGGAGGGTCAGTGTGGAGGCCTAGCACACCTGTCCGATGACCTAGAGAGAATTCGAGGAGAGCTGGAGAAGCAGTCTGATGGGTATCTGTCTCACGTAAATAGCACCCTTGTTAACCATTCTCACCAACTGTCCGAACTCAGAGATAGCATCCAAAACTGCACTGGAACTTCTGGGCCTTCTAAGATTGTGGCGACTACACAACAAACAGCAGAACAACACACAACAGAACCAACCCATCCTAGAGGAGACCAGTTTGCAGTCCCCACACAGCACAAGGGTGACTAG
>TCONS_00071196
GTCCAGTGCATTCATTTAAAAGGCCTATGTCTGCACAGAAAGGTCCAATGCCCTCTTATAAACGTCCAAATGCATCTCAAAAGGGACACATACCTTCATATAAAGGACAGTATCCCCATCCCAATGTCAATGGAAACCCCTGGATTCAGCCTCAAGCTCCAACTAATGGCATAATTGGATATCCAGTTCCTAATACTGGGCCGTCCTCCCAAGATCCTCCAATTGAATCTTACCCAGAGCACCAGGAACCGGAAGTAGATTATCCTGAACCCGTGATTGAACCTCAAGACCTTGGCCATGATATAATCCCAGAAGAGAATGAACCAGTTACTGACTACCAGGATCCTCAGCCAGATCATCAAACTTCCACAACAGTAGAGAGTGAGACAGAGCCTATTCGCAATGCACAAGTGCCCTCTGGTGGGAGTGAAACAAACCAAGAACATGATGACAACAATATTGAAGATGAGCGGTTGGACAGGATAGAAGAGGATGTGCAACGACTTTCTCTTGGTCTTGAGACTCTCCGAGGTACAGTGACAGGTTTGGAGGACAGCTTGCGTGCTTCCCTTCGTGAAGATGCCAATAGGATGTTAACTGCCCTGATTTCTGCAGCACCCAGCCCTATCTCTGCTCCTTCCTTGTCTAGAGACTCTACTGTGGGCTTTGGAGATCTACCTGGAGGTGCACCGGATATTGAGGGATCAGATGTGGTGGGACACTTTCCAAACTTGGTCGATTTAACTGAAAAGGTTACAGAGCTGCGAGCAGAACTTGTGGCAAAGTCATCTGAGCTGGAAAAATTGAGAGGAGCAGTTGTGAGTCAAAACACCACCCTTCAAAGACTATCAGGTGGGTCAGTGAACCTTAATCAAACTGAAATCCAAAAGGCCCTGGAAACAATGGTGGAGTCCAAAATGAGTGA

Function

symbol description
emilin3a Acts upstream of or within muscle cell development; notochord morphogenesis; and regulation of smoothened signaling pathway. Is expressed in several structures, including chordo neural hinge; floor plate; hypochord; notochord; and pharyngeal arch 3-7 skeleton. Orthologous to human EMILIN3 (elastin microfibril interfacer 3).

GO:

id name namespace
GO:0048747 muscle fiber development biological_process
GO:0048570 notochord morphogenesis biological_process
GO:0008589 regulation of smoothened signaling pathway biological_process

KEGG: NA

ZFIN:

id description
ZDB-GENE-080612-2 Acts upstream of or within muscle cell development; notochord morphogenesis; and regulation of smoothened signaling pathway. Is expressed in several structures, including chordo neural hinge; floor plate; hypochord; notochord; and pharyngeal arch 3-7 skeleton. Orthologous to human EMILIN3 (elastin microfibril interfacer 3).

Ensembl:

ensembl_id ENSDARG00000078052

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00071195 False 1797 mRNA 0.48 1 22962690 22964486
TCONS_00071196 True 925 mRNA 0.47 2 22964152 22965214
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Neighbor

gene id symbol gene type direction distance location
XLOC_036421 NA coding downstream 95587 22862004 ~ 22867103 (-)
XLOC_036420 BX072561.2 coding downstream 116892 22844700 ~ 22845798 (-)
XLOC_036419 magixa coding downstream 124326 22761854 ~ 22838364 (-)
XLOC_036418 iqsec2a coding downstream 222933 22567363 ~ 22739757 (-)
XLOC_036417 porcnl coding downstream 403917 22544290 ~ 22558773 (-)
XLOC_036423 emilin3a coding upstream 403 22965617 ~ 22965916 (-)
XLOC_036424 si:dkey-70p6.1 coding upstream 75513 23040727 ~ 23081667 (-)
XLOC_036425 NA coding upstream 156299 23121513 ~ 23123787 (-)
XLOC_036426 NA coding upstream 169486 23134700 ~ 23137569 (-)
XLOC_036427 si:ch211-196c10.15 coding upstream 225772 23190986 ~ 23194408 (-)
XLOC_036413 NA non-coding downstream 488048 22405875 ~ 22474642 (-)
XLOC_036411 NA non-coding downstream 528580 22384742 ~ 22434110 (-)
XLOC_036410 NA non-coding downstream 534671 22383250 ~ 22428019 (-)
XLOC_036428 NA non-coding upstream 252284 23217498 ~ 23219956 (-)
XLOC_036430 NA non-coding upstream 275648 23240862 ~ 23250204 (-)
XLOC_036432 NA non-coding upstream 422670 23387884 ~ 23390242 (-)

Expression

Expression of XLOC_036422(emilin3a) in the Zebrafish Sample from each Developmental Stage of PRJEB12982

Boxplot with 18 boxes. Box plot charts are typically used to display groups of statistical data. Each data point in the chart can have up to 5 values: minimum, lower quartile, median, upper quartile, and maximum.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 400.
End of interactive chart.

Expression of XLOC_036422(emilin3a) in the Zebrafish Sample of PRJEB12982

Bar chart with 360 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 400.
End of interactive chart.

Co-expression Network