G1703108


Basic Information

Item Value
gene id G1703108
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 5113139 ~ 5114445 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1949554
CCGGCGGCGGGCCGGCGTCATGGCAACGCCCTTGCATGGCAATCCAATTTATTGAACTACAGATGCTGGGTTATACAAAATACACCACTTCAATTAAGGCTTTTTAGTTTACATTTGGCCACGCCCCCTGTGGTTGTccctccctcagcccctcccctTAATAGGCAGATGCTGTTGCATTTCCAACACTGTGGCTCTGTGAGGGGACACATGGTACACACGGTCTGTCCACCAGGACTGATGCTGTTTCGTTATCATCACAGCAACACAAAGCGACAAAGGCATTCTCTTACAAGAGGTCAACAGAGGTCACGCAACTCACAACAAACGTGCAACtttaaccccccctcccctcccctcccctcccctccatctcaaATGGCAACCTAAGCCCATAGGGctatagtcaaaagtagtgccctatgtagggaatagggtgtcattagggacgtaccccccccccccaccgtctCATCCAAGTTCtgcctgttcctcctcctccatcatcatcatcatcatcatctccatTGCTGTGGTTCTTATTGTATTTCAGTCTTATTCCCTGCTGCTTTCAAACACATTAGtttgtccccccctcccccccacattCACTATAGAACAGATAACAACCCCACACGGTTActcttcatcaccatcatcatcatcatctgacagactgacaggaaacAGGTCGAACCAAGTATTACACAGGTGAAATAGTCACTAACAGGCAAGTTTCTTTACTGACAGGATCCAATATTTGGTTTTCATGTCCTCAGCTGACAACAGATGCATTAGCAAGCAAGGGGACAGgggaggggctgggagagagggggaggggctgggggagagggggaggggctgggggagggctaggggacaggggaggggctggaggagagggggaggggctgggggagagggggaggggctggGGGAGGGCTAGGGGTGAGGAGTGAGATAGGGGAAAGAGGCTAGGGGACAGGGGGAGATAGGggctgtgggagggagggagaaggggagagaggctgTTTTAGAAAAGGAGAGGGAGTACAGTGAGAATCTACAgtagcgtttcccaaactcggtcctgggccccccccctgggtgcatgttttggttcttgccctagcactacacagattACTCAAATAATCTTCAagcttgattatttgaatcagctgtgcagtgccGAAAGGTGTcccccttggggtccccagga
>TU1949556
CCGGCGGCGGGCCGGCGTCATGGCAACGCCCTTGCATGGCAATCCAATTTATTGAACTACAGATGCTGGGTTATACAAAATACACCACTTCAATTAAGGCTTTTTAGTTTACATTTGGCCACGCCCCCTGTGGTTGTccctccctcagcccctcccctTAATAGGCAGATGCTGTTGCATTTCCAACACTGTGGCTCTGTGAGGGGACACATGGTACACACGGTCTGTCCACCAGGACTGATGCTGTTTCGTTATCATCACAGCAACACAAAGCGACAAAGGCATTCTCTTACAAGAGGTCAACAGAGGTCACGCAACTCACAACAAACGTGCAACtttaaccccccctcccctcccctcccctcccctccatctcaaATGGCAACCTAAGCCCATAGGGctatagtcaaaagtagtgccctatgtagggaatagggtgtcattagggacgtaccccccccccccaccgtctCATCCAAGTTCtgcctgttcctcctcctccatcatcatcatcatcatcatctccatTGCTGTGGTTCTTATTGTATTTCAGTCTTATTCCCTGCTGCTTTCAAACACATTAGtttgtccccccctcccccccacattCACTATAGAACAGATAACAACCCCACACGGTTActcttcatcaccatcatcatcatcatctgacagactgacaggaaacAGGTCGAACCAAGTATTACACAGGTGAAATAGTCACTAACAGGCAAGTTTCTTTACTGACAGGATCCAATATTTGGTTTTCATGTCCTCAGCTGACAACAGATGCATTAGCAAGCAAGGGGACAGgggaggggctgggagagagggggaggggctgggggagagggggaggggctgggggaggggGGGAGGGCTAGGGGTGAGGAGTGAGATAGGGGAAAGAGGCTAGGGGACAGGGGGAGATAGGggctgtgggagggagggagaaggggagagaggctgTTTTAGAAAAGGAGAGGGAGTACAGTGAGAATCTACAgtagcgtttcccaaactcggtcctgggccccccccctgggtgcatgttttggttcttgccctagcactacacagattACTCAAATAATCTTCAagcttgattatttgaatcagctgtgcagtgccGAAAGGTGTcccccttggggtccccagga

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1949554 False 1222 lncRNA 0.53 2 5113139 5114445
TU1949556 True 1160 lncRNA 0.52 3 5113139 5114445

Neighbor

gene id symbol gene type direction distance location
LOC118942989 NA coding downstream 52821 5052618 ~ 5060318 (-)
LOC118936570 mdm1 coding downstream 142748 4932214 ~ 4970391 (-)
ifng ifngamma1 coding downstream 335058 4756753 ~ 4778081 (-)
LOC118942988 NA coding downstream 384408 4723028 ~ 4728731 (-)
LOC110516460 LOC106593189 coding downstream 408616 4692883 ~ 4704523 (-)
LOC110518655 LOC106592876 coding upstream 88369 5202814 ~ 5224336 (-)
LOC118942990 NA coding upstream 111624 5226069 ~ 5228087 (-)
LOC118942834 LOC106576655 coding upstream 121795 5236240 ~ 5313033 (-)
LOC118942837 b2mg coding upstream 306429 5420336 ~ 5426626 (-)
LOC110491894 b2m coding upstream 320831 5435276 ~ 5452253 (-)
G1703109 NA non-coding downstream 101 5088105 ~ 5113038 (-)
G1703165 NA non-coding downstream 5622 5107220 ~ 5107517 (-)
G1703162 NA non-coding downstream 16402 5095773 ~ 5096737 (-)
G1703145 NA non-coding downstream 42458 5052084 ~ 5070681 (-)
G1703148 NA non-coding downstream 56317 5056213 ~ 5056822 (-)
G1703167 NA non-coding upstream 3306 5117751 ~ 5118194 (-)
G1703169 NA non-coding upstream 6431 5120876 ~ 5121209 (-)
G1703171 NA non-coding upstream 8614 5123059 ~ 5123610 (-)
G1703174 NA non-coding upstream 13992 5128437 ~ 5128977 (-)
G1703183 NA non-coding upstream 60792 5175237 ~ 5177003 (-)
G1703085 NA other downstream 165728 4946598 ~ 4947411 (-)
G1702914 NA other downstream 668220 4442249 ~ 4444919 (-)
LOC110499739 grip1 other downstream 1524552 3585864 ~ 4306764 (-)
G1702141 NA other downstream 1594762 3281102 ~ 3518377 (-)
G1703190 NA other upstream 86382 5200387 ~ 5202057 (-)
G1703200 NA other upstream 118190 5232635 ~ 5235225 (-)
G1703323 NA other upstream 315023 5429468 ~ 5430889 (-)

Expression

G1703108 Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 40.
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G1703108 Expression in each Bioproject

Bar chart with 19 bars.
G1703108 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 600.
End of interactive chart.

Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G111604 NA non-coding CI01000020 null 603695 ~ 629505 (-)
bowfin (Amia calva) G111451 NA non-coding CM030134.1 CM030134.1 14182781 ~ 14299856 (-)