G1703337


Basic Information

Item Value
gene id G1703337
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 5499110 ~ 5501117 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1949876
AAACCACTAAACTCACTCtattacagtgttactaaactcattctactacagtgttactaaactcactctactacagtgttactaaactcactctactacagtgttactaaactcactctactacagtgttactaaactcactctattacagtgttactaaactcactctactacagtgttactaaactcactatattacagtgttactaaatcactaaactcactctactacagtgttactaaaccactaaactcactctactacagtgttactaaactcactctattacagtgttactaaactcactctattacagtgttactaaaccactaaactcactctactacagtgttactaaaccactaaactcactctactacagtgttactaaactcactctattacagtgttactaaacCactaaactcactctattacagtgttactaaactcactctactacagtgttactaaactaactctattacagtgttactaaactcactctattacagtgttactaaaccactaaactcactctattacag
>TU1949879
AAACCACTAAACTCACTCtattacagtgttactaaactcattctactacagtgttactaaactcactctactacagtgttactaaactcactctactacagtgttactaaactcactctactacagtgttactaaactcactctattacagtgttactaaactcactctactacagtgttactaaactcactatattacagtgttactaaatcactaaactcactctactacagtgttactaaaccactaaactcactctactacagtgttactaaactcactctattacagtgttactaaactcactctattacagtgttactaaaccactaaactcactctactacagtgttactaaaccactaaactcactctactacagtgttactaaactcactctattacagtgctactaaactcactctattacagtgttactaaactcactctactacagtgttactaaactcactctactacagtgttattaaactc
>TU1949877
gtgttactaaactcactctattacagtgttactaaactcactctattacagtgttactaaaccactaaactcactctactacagtgttactaaacCACTAAACTCACTCTACTACAGTGTTACTAAACCACTAAACTCACTCTACTACAGTGTTACTAAACTCACTCTACCACAGTGTTACTAAACTCACTCTACTACAGTGTTACTAAATTCACTCtattacagtgttactaaaccactaaactcactctactacagtgttactaaaccactaaactcactctattacagtgttactaaaccactaaactcactctatTACAGTGTTACTAAACTCACTCTACTACAGTGTTACTAAACTCACTCTACTACAGTGTTACTAAACCACTAAACTCACTCTACTACAGTGTTCCTATACTCACTCTTGTTACAGTGGCGTCCGTGCCAGCCCTCCTTACACAGGCAC
>TU1949878
gtgttactaaactcactctattacagtgttactaaactcactctattacagtgttactaaaccactaaactcactctactacagtgttactaaacCACTAAACTCACTCTACTACAGTGTTACTAAACCACTAAACTCACTCTACTACAGTGTTACTAAACTCACTCTACCACAGTGTTACTAAACTCACTCTACTACAGTGTTACTAAATTCACTCtattacagtgttactaaaccactaaactcactctactacagtgttactaaaccactaaactcactctattacagtgttactaaaccactaaactcactctattacag

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1949876 False 549 lncRNA 0.34 3 5499110 5500826
TU1949879 False 496 lncRNA 0.34 3 5499110 5500260
TU1949877 False 466 lncRNA 0.38 4 5499724 5501117
TU1949878 True 324 lncRNA 0.35 3 5499724 5500826

Neighbor

gene id symbol gene type direction distance location
LOC110491886 tmbim4 coding upstream 26116 5457539 ~ 5472994 (+)
LOC118942836 LOC106576675 coding upstream 82552 5402208 ~ 5416558 (+)
LOC118942835 LOC106576675 coding upstream 148676 5340534 ~ 5350434 (+)
LOC110516940 LOC106609861 coding upstream 298917 5182911 ~ 5200193 (+)
LOC118942833 NA coding upstream 322426 5175495 ~ 5176684 (+)
LOC110511233 LOC107655547 coding downstream 62105 5563222 ~ 5598052 (+)
LOC118942839 NA coding downstream 92564 5593681 ~ 5595397 (+)
LOC110519381 LOC106576618 coding downstream 110769 5611886 ~ 5657179 (+)
LOC118936346 dera coding downstream 364173 5865290 ~ 5879297 (+)
LOC118942842 LOC106575061 coding downstream 478234 5979351 ~ 5986641 (+)
G1703291 NA non-coding upstream 4657 5493293 ~ 5494453 (+)
G1703230 LOC106592946 non-coding upstream 5826 5424487 ~ 5493284 (+)
G1703290 NA non-coding upstream 12430 5486377 ~ 5486680 (+)
G1703286 NA non-coding upstream 19605 5479116 ~ 5479505 (+)
G1703282 NA non-coding upstream 20703 5477192 ~ 5478407 (+)
G1703338 NA non-coding downstream 582 5501699 ~ 5502341 (+)
G1703353 NA non-coding downstream 53126 5554243 ~ 5601693 (+)
G1703369 NA non-coding downstream 87513 5588630 ~ 5588927 (+)
G1703379 NA non-coding downstream 141119 5642236 ~ 5642693 (+)
G1703381 NA non-coding downstream 141880 5642997 ~ 5644121 (+)
G1702856 NA other upstream 244225 5254165 ~ 5254885 (+)
G1702793 NA other upstream 444646 5052447 ~ 5054464 (+)
LOC110516816 LOC107655592 other upstream 1098129 4384016 ~ 4441236 (+)
G1703391 NA other downstream 216082 5717199 ~ 5717701 (+)
G1703427 LOC106590880 other downstream 482228 5983345 ~ 5994810 (+)
mrps33 mrps33 other downstream 726997 6228081 ~ 6252333 (+)
G1703953 NA other downstream 904915 6406032 ~ 6406773 (+)

Expression


Co-expression Network