G1703389


Basic Information

Item Value
gene id G1703389
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 5680066 ~ 5719953 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1949985
aaaatgtttaaaaataacaTCTCTTATAGCTTTTCATGCTGATGATCGACAGTCTGGCGATGGCTGCGTCTCAAAACAGTACTAGCCGTCAATGACTTGCTTCACCCCCTAACCTGTCCTCCTCATTGGAGGAGAAGTTCCCGAGAGGAGGAACCCGTAGAGCCACACCTCCAATGAGCTTTGAGAGGAATTACGGCAACGAGGAAGCAGTAAGCAAAGGATTTTTAACCTGCTTGTGGCGTATTTAGACAAAGCCATTGTTCTTCTCAGCCGTGAAGTCTATCTGTTTCTAGGCCGTGCTTTTCAAAGCTACAACATGTGATCGACCAACTCACACAGGTAGGCCCTACGAAGCCGTTTCAAAACCAAGGCAGCTGTCAAACGGCGTCGACATAAAGCATAGGCCCACTATGACTTCACCTCGTCAACAATAGGTTTGTTCTTGATCAACCTACGCTCTCTGTTTTGATTGTTATGTACCTGAGAGTTATCAAGAGTTGTTATGACAGATGAACCCACCCAATGATACAGTTCAGGGAACATTCTGGACAGTAATAGTGTGTGAAGAAACTAATGCTGCCTTCCTCAGGAAAATAGGAAATTCTGAAGTATGCATCTGACTGAGAAACTCGGAAGTATTCGACTGAGAAACTCGGAAGTATTCGACTGAGACACTCGGAAGTATTCGACTGAAAAACTCGGAAGTCTCCGACTGAGAAACTCGGAAGTCTCCGACTGAGACACTCGGAAGTCTCCGACTGAGAAACTCGGAAGTATCCGACTGAGAAACTCGGAAGTCTCAAACTGAGAAACTCTGAAGTATCCGACTGAGAAACTTGCAAGTATCCAACTGAGAAACTTGGAAGTATCCTACTGAGTAACTCGCAACTATCCGACTGAGAGACTCGGAAGTCTCCGACTGAGAAACTCGGAAGTATTCGACTGGAAAACTCGGAAGTCTCCGACTGAGACACTCGGAAGTCTCTGACTGAGACACTCGGAAGTCTCTGACTGAGACACTCGGAAGTCTCCGACTGAGACACTCGGAAGTCTCCGACTGAGAAACTCGGAAGTCTCCGACTGAGAAACTCGGAAGTCTCCGACTGAGACACTCGGAAGTCTCCGACTGAGAAACTCGGAAGTCTCCGACTGAGAAACTCAGAAGTATCCGACTGAGAAACTCGGAAGTATCCGACTGAGAAACTCGGAAGTCTCAAACTGAGAAACTCGGAAGTATCCGACAGAGAAACTCGGAAGTATTTGACTGAGAAACTCGTAAGTCTCCGACTGAGAAACTCGGAAGTATCCGACTGAGAAACTCGGAAGTATTCGACTGAGAAACTCGGAAGTCTCAAACTGAGAAACTCTGAAGTATTCGACTGAGAAACTCGGAAGTCTCAAATTGAGAAACTCGGAAGTCTCAAACTGAGAAACTCTGAAGTATTCAACTGAGAAACTCAGAAGTATCAATATAATTCAGAGAGCACATGAAAGCAGCTTAAAACTGACTGATGTCAAGTTTGAATTGCAGCTTGCAGACCTGTGTGAGTGGAAAGGGCATGTTGGGTTGTTTGACTAACTCTCTGAGGCTCCCTACCTCAGGCCCGTGTGAGTGGAAAGGGCATGTTGGGTTGTTTGACTAACTCTCTGAGGCTCCCTACCTCAGACCCGTGTGAGTGGAAAGGGCATGTTGGGTTGTTTGACTAACTCTCTGAGGCTCCCTACCTCAGGCCCGTGTGAGTGGAAAGGGCATGTTGGGTTGTTTGACTAACTCTCTGAGGCTCCCTACCTCAGGCCCGTGTGAGTGGAAAGGGCATGTTGGGTTGTTTGACTAACTCTCTGAGGCTCCCTACCTCAGGCCCGTGTGAGAATATACCATGTTAACATTTAAAAGTTGTAACCCATCACTACTTAAAGAAGCATTTTCGTATACATCTGGTTGAACCATAACAACAAGAAAGAGAAAATCACGTGTCGTAAAAGTACACAAAATAACTAATCAAGTATATCAATATCTACTAATTAACAAAAACCAAATCCACGAATACAATATACAAAAACCCCAAACATATATTTTTCAAAACCTGAAAATCTTCaagatacaattttttttttttttaaaggttattTCTTCCGCAGGGTGAAGTCAACATTTACTTGGTTCAGAAGTTTTGAAAACAagttacaacaaaaaaaaaataccttTGAGTAAGGGATCTTTCGCAGTCCTTAATATCGATAGATTTCATCATACATTATCAAAACTCGCACTGATATAGAAAGAAAcccggcaaaaaaaaaaaaaattccttTTCAAGACTGGAGGTAGGTATTTGTCAATCGATTATaagtccatttttttttttatcagtttgTTTGAGGTATGTAATGTAGATGAAATAGTACATAgttcagaaaaaaaaaatcagagcaaaaacaaacaaacaaacaataataTCGTGTCGTGTCATACAAGCACTTGATTcttaatatataaaaaaaaaaacgttgagTAAATCAGAGAAACAAATATATATTCAAGTGAACAGTTTGTCAAACAGAAGGCCCAGTTGAGGAAAGGTAGAAGTGGGTGTCTCGTTAGGACTGACTTAGATACACAAACACTAATGTTCATGTCAAATAAAGACACCACAGTGCTTCTTCCATTAGCTGCTTATGAGTTCTACAaaggaattatatatatatatatttttttaaactcctGATTTCAGTAAATTACCTGTCAGATTTACACAGAACATTACACAGAACATGTCTGTTCCACTGTGAGACACAAGACAACAACTTTTATAACAAGTTAGCtcgttgacacacacacacacacacactgccaccccATGCATTGTTGTGTGTAGTAATACTATGTAGTACTGCGTAGTACTATTTagtactgtgtggtactgtgtacTACTATTTagtactgtgtggtactgtgcAGTACTGTGTAGCAGGGCAGTGTGCATTCCTTGAGGTTGGAGTTTTCAGGTTGTTGCGGTGGAAATCGGAGGTAGTTTGAAATGGTGAGGAGATATTGCATCAGCATCAGACCACAAAGTGCCGACATGTCTTCGGAATTCTTAGAATACCTGAAGTAAGGATTATCAGGGTTCTAGAATACCTGAAGGATTatcagggttctagaacacctgaGGTAAGGATTATCAGGCTTCTAGAATACCTGAAGGATTATCCGGCTTCTAGAATACCTGAAGGACTTTCAGGCTTCTAGAATACCTGAAGTAAGGATTATCAGGCTTCTAGAATACCTGAAGGATTATCAGGCTTCTAGAATACCTGAAGGACTTTCAGGCTTCTAGAATACCTGAAGGATTATCAGGCTTCTAGAATACCTGAAGGATTATCAGGCTTCTAGAATACCTGAAGTAAGGATTATCAAGGTTCTGGTTCTAGAATTCCTGAGTCATCCTATCTCACACTGCCACTAAAGGTGCAGGTAAAACATGAGGTaaattgtgtgttttttgttattatgtttttgtttgtatGTATCTTAAGGTTTGTTTTGTTAAGGCAGACCAGGTTAGTGTGAAAAAAAGAGAGCATTTCCTTAGCAAAAATAGTATCAATGGAATCCATGGTTTTACAGCAATGCTGTGAATAAGAAGGAACATAAAAttacaaacatacagtatgtgtgtatgtatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtaagtgtgtgtgtctaataGTAACATGGTAAACGTCAACACCGGATGGGGTCGGGACCGAGGCACTCCAACACTGGCCATAAAGGAACATCTGAAAGACGCTGGTTCCCCATTCTGATGGAACTGGAACGACACTAACAGGATACACccccaggaccctattccctatgtagtgcgctactatagaccctattccctatgtagtgcattacttttgttgtgcacaatatagggaatagggtgcagtgtGAGAAGCAGCCATAGGATACACATATTATAACAAGCAGACACtgaaatgggaccctattccctatgtagtgcactacttctgaccagagccctattccctatgtagtgcactacttctgaccagagctgtCGTGTCACAgattccaccctattccctatatagtgcaccacttctgACCAGAACTGTTGTCACAgattccaccctattccctatgtagtgcactacttctgaccagagctgtTGTGTCACAgattccaccctattcccta

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1949985 True 4233 lncRNA 0.42 5 5680066 5719953

Neighbor

gene id symbol gene type direction distance location
LOC110519381 LOC106576618 coding upstream 23479 5611886 ~ 5657179 (+)
LOC110511233 LOC107655547 coding upstream 82014 5563222 ~ 5598052 (+)
LOC118942839 NA coding upstream 84669 5593681 ~ 5595397 (+)
LOC110491886 tmbim4 coding upstream 207072 5457539 ~ 5472994 (+)
LOC118942836 LOC106576675 coding upstream 263508 5402208 ~ 5416558 (+)
LOC118936346 dera coding downstream 145337 5865290 ~ 5879297 (+)
LOC118942842 LOC106575061 coding downstream 259398 5979351 ~ 5986641 (+)
LOC110527635 LOC106590880 coding downstream 266822 5986775 ~ 5993790 (+)
mrps33 mrps33 coding downstream 508128 6228081 ~ 6252333 (+)
LOC110500907 braf coding downstream 539860 6259813 ~ 6304321 (+)
G1703388 NA non-coding upstream 1919 5675743 ~ 5678147 (+)
G1703381 NA non-coding upstream 35945 5642997 ~ 5644121 (+)
G1703379 NA non-coding upstream 37373 5642236 ~ 5642693 (+)
G1703353 NA non-coding upstream 78373 5554243 ~ 5601693 (+)
G1703386 NA non-coding downstream 15871 5735824 ~ 5740334 (+)
G1703420 NA non-coding downstream 85233 5805186 ~ 5805425 (+)
G1703437 NA non-coding downstream 122313 5842266 ~ 5842914 (+)
G1703438 NA non-coding downstream 124820 5844773 ~ 5845046 (+)
G1703441 NA non-coding downstream 132230 5852183 ~ 5852416 (+)
G1702856 NA other upstream 425181 5254165 ~ 5254885 (+)
LOC110516940 LOC106609861 other upstream 491219 5182911 ~ 5200193 (+)
G1702793 NA other upstream 625602 5052447 ~ 5054464 (+)
G1702554 NA other upstream 1284551 4394993 ~ 4395515 (+)
G1703427 LOC106590880 other downstream 263392 5983345 ~ 5994810 (+)
G1703953 NA other downstream 686079 6406032 ~ 6406773 (+)
LOC118942844 large1 other downstream 1083266 6712920 ~ 6879730 (+)
G1704232 NA other downstream 1287216 7007169 ~ 7007740 (+)

Expression


Co-expression Network