G1703386


Basic Information

Item Value
gene id G1703386
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 5735824 ~ 5740334 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1949962
ctatagtttaGGGTACTGGGGGgatgctagtaacagtgactatagttcagggtactggggggaggccggtaacagtgactatagttcagggtactgggggaggctagtaacagtgactatagttcagggtactggggggaggctagtaacagtgactatagttcagggtactggggggagactagtaacagtgactatagttcagggtactgggtggaggctagtaacagtgactatagttcagggtagggtactggggggagactagtaacagtgactatagttcagggcagggtactgggtggaggctagtaacagtgactatagttcagggcagggtactggggggagactagtaacagtgactatagttcagggcagggtactggggggagactagtaacagtgactatagttcagggtactgggtggaggctagtaacagtgactatagttcagggcagggtactgggggagactagtaacagtgactatagttcagggcagggtactggggggagactagtaacagtgactatagttcagggcagggtactggggggagactagtaacagtgactatagttcagggtactgggtggaggctagtaacagtgactatagttcagggcagggtactggggggaggctagtaacagtgactatagttcagggtactggggggaggctagtaacagtgactatagttcagggtactgggtggaggctagtaacagtgactatagttcagggtactggggggagactagtaacagtgactatagttcagggcagggtactggggggaggctagtaacagtgactatagttcagggcagggtactgggtggaggctagtaacagtgactatagttcagggcagggtactgggtggaggctagtaacagtgactatagttcagggcagggtactgggtggaggctagtaacagtgactatagttcagggtactggggggaggctagtaacagtgactatagttcagggtactggggggaggctagtaacagtgactatagttcagggtactggggggagactagtaacagtgactatagttcagggtactggggggaggctagtaacagtgactatagttcagggtactggggggagactagtaacagtgactatagttcagggcagggtactgggtggagactagtaacagtgactatagttcagggtactgggggaggctagtaacagtgactatagttcagggcagggtactgggtggaggctagctagtaacagtgactatggttcagggcagggtactgggtggagttCGGCTAGTAAATGTCTATTTAACCGTCCGATGGCCGTGAGATAGCAGTTTACCTCAGAGACAAACTTCAGAAAGACTCAAAACTTCAacgaaaaaaagaaaaaaaaaaaaaactccaaaaACAATGTAACAC
>TU1949971
gggtactgggtggaggctagtaacagtgactatagttcagggtactgggtggaggctagtaacagtgactatagttcagggtactgagggagactagtaacagtgactatagttcagggtactggggggagactagtaacagtgactatagttcagggtactggggggagactagtaacagtgactatagttcagggtactgggggagactagtaacagtgactatagttcagggcagggtactgggggaggctagtaacagtgactatagttcagggtactggggggaggctagtaacagtgactatagttcagggtactgggggaggctagtaacagtgactatagttcagggtactggggggaggctagtaacagtgactatagttcagggtactggggggaggctagtaacagtgactatagttcagggtactggggggaggctagtaacagtgactatagttcagggtactggggggaggctagtaacagtgactatagttcagggtactgggtggaggctagtaacagtgactatagttcagggtactgggtggagactagtaacagtgactatagttcagggtactggggggagactagtaacagtgactatagttcagggtactgggggagactagtaacagtgactatagttcagggcagggtactggggggagactagctagtaacagtgactatggttcagggcagggtactgggtggagttCGGCTAGTAAATGTCTATTTAACCGTCCGATGGCCGTGAGATAGCAGTTTACCTCAGAGACAAACTTCAGAAAGACTCAAAACTTCAacgaaaaaaagaaaaaaaaaaaaaactccaaaaACAATGTAACAC

Function

NR:

description
serine/arginine repetitive matrix protein 2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1949962 False 1444 lncRNA 0.50 3 5735824 5740334
TU1949971 True 865 lncRNA 0.48 3 5739041 5740334

Neighbor

gene id symbol gene type direction distance location
LOC110519381 LOC106576618 coding upstream 79237 5611886 ~ 5657179 (+)
LOC110511233 LOC107655547 coding upstream 137772 5563222 ~ 5598052 (+)
LOC118942839 NA coding upstream 140427 5593681 ~ 5595397 (+)
LOC110491886 tmbim4 coding upstream 262830 5457539 ~ 5472994 (+)
LOC118942836 LOC106576675 coding upstream 319266 5402208 ~ 5416558 (+)
LOC118936346 dera coding downstream 124956 5865290 ~ 5879297 (+)
LOC118942842 LOC106575061 coding downstream 239017 5979351 ~ 5986641 (+)
LOC110527635 LOC106590880 coding downstream 246441 5986775 ~ 5993790 (+)
mrps33 mrps33 coding downstream 487747 6228081 ~ 6252333 (+)
LOC110500907 braf coding downstream 519479 6259813 ~ 6304321 (+)
G1703389 NA non-coding upstream 15871 5680066 ~ 5719953 (+)
G1703401 NA non-coding upstream 21759 5712633 ~ 5714065 (+)
G1703388 NA non-coding upstream 57677 5675743 ~ 5678147 (+)
G1703381 NA non-coding upstream 91703 5642997 ~ 5644121 (+)
G1703420 NA non-coding downstream 64852 5805186 ~ 5805425 (+)
G1703437 NA non-coding downstream 101932 5842266 ~ 5842914 (+)
G1703438 NA non-coding downstream 104439 5844773 ~ 5845046 (+)
G1703441 NA non-coding downstream 111849 5852183 ~ 5852416 (+)
G1703443 NA non-coding downstream 116824 5857158 ~ 5857485 (+)
G1703391 NA other upstream 18123 5717199 ~ 5717701 (+)
G1702856 NA other upstream 480939 5254165 ~ 5254885 (+)
LOC110516940 LOC106609861 other upstream 546977 5182911 ~ 5200193 (+)
G1702793 NA other upstream 681360 5052447 ~ 5054464 (+)
G1703427 LOC106590880 other downstream 243011 5983345 ~ 5994810 (+)
G1703953 NA other downstream 665698 6406032 ~ 6406773 (+)
LOC118942844 large1 other downstream 1062885 6712920 ~ 6879730 (+)
G1704232 NA other downstream 1266835 7007169 ~ 7007740 (+)

Expression


Co-expression Network