G1703427 (LOC106590880)


Basic Information

Item Value
gene id G1703427
gene name LOC106590880
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 5983345 ~ 5994810 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1950048
TGATAGACAGCGAGGTGTTCCTGGCCTTCTCTACCTACGCCACTGTCGTCGTCCTCAAGATGATGCTGATGTCTCCTATGACTGGATACTTCCGCTTCACGAGAAAGGCATTTGCTAACCAGGAGGACACCAGTCTGGCCTCCTCTACGGAGGACAAGAAGAAGCTGGTCAGGGTGGATCCTGATGTGGAGAGAGTACGAAGaTGCCACCAGAACGACCTGGAGAACATCATCCCGTTCGTAGTGATTGGTCTGCTGTATACCCTGACGGGGCCCGACCTCTCCACTGCTCTGCTCCACTTCCGGGTGTTTGTTGGTTCCAGGCTCTTCCACACGGTGGCCTACGTCCTCCCCCTGCCCCAACCCAGCAGAGCTGTGGCCTTCCTCATCGGACTGGTCACCACCAGCTCTATGGCCTCTAGGGTTCTGATTACTGCGCTTTATCTGTAGAGGCctgaggggacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacaccactacaagGGCCTTGTCTTTGAGGGTCTCCATTGAATGTGCTTGAGGAGGATACATTTACGTTTATCAAAGTTGTTCCTTCTGTGTCTCTGATAGGATTATAACATGCTGTTACtgcagtacatatcagaatgttactgcagtacatatcagaatgttactgcagtacatatcagaatgttactgacagtacatatcagaatgttactgcagtacatatcagaatgttactgctgtacatatcagaatgttactgcagtacatatcagaatgttactgcagtacatatcagaatgttactgcagtacatatcagaatgttactgacagtacatatcagaatgttactgacagtacatatcagaatgttactgcagtacatatcagaatgttactgcagtacatatcagaatgttactgcagtacatatcagaatgttactgacagtacatatcagaatgttactgcagtacatatcagaatgttactgcagtacatatcagaatgttactgcagtacatatcagaatgttactgcagtacatatcagaatgttactgcggtacatatcagaatgttactgcaGTATCTGTGTCTCTGATAGGATTATAACATGCTGTTACtgcagtacatatcagaatgttactgcagtacatatcagaatgttactgcagtacatatcagaatgttactgcagt

Function

NR:

description
uncharacterized protein LOC110527629 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1950048 True 1249 TUCP 0.45 4 5983345 5994810

Neighbor

gene id symbol gene type direction distance location
LOC118936346 dera coding upstream 104054 5865290 ~ 5879297 (+)
LOC110519381 LOC106576618 coding upstream 326758 5611886 ~ 5657179 (+)
LOC110511233 LOC107655547 coding upstream 385293 5563222 ~ 5598052 (+)
LOC118942839 NA coding upstream 387948 5593681 ~ 5595397 (+)
LOC110491886 tmbim4 coding upstream 510351 5457539 ~ 5472994 (+)
mrps33 mrps33 coding downstream 233271 6228081 ~ 6252333 (+)
LOC110500907 braf coding downstream 265003 6259813 ~ 6304321 (+)
LOC118942844 large1 coding downstream 718110 6712920 ~ 6879730 (+)
LOC118942849 arhgap8 coding downstream 1532717 7527527 ~ 7561975 (+)
LOC118942991 NA coding downstream 1566534 7561344 ~ 7574758 (+)
G1703435 NA non-coding upstream 32262 5950516 ~ 5951083 (+)
G1703466 NA non-coding upstream 39196 5941409 ~ 5944149 (+)
G1703457 NA non-coding upstream 69716 5913218 ~ 5913629 (+)
G1703456 NA non-coding upstream 73089 5909955 ~ 5910256 (+)
G1703451 NA non-coding upstream 85816 5897213 ~ 5897529 (+)
G1703478 NA non-coding downstream 3822 5998632 ~ 5999038 (+)
G1703483 NA non-coding downstream 16556 6011366 ~ 6013717 (+)
G1703490 NA non-coding downstream 34529 6029339 ~ 6030265 (+)
G1703499 NA non-coding downstream 58694 6053504 ~ 6066427 (+)
G1703500 NA non-coding downstream 60684 6055494 ~ 6126262 (+)
G1703391 NA other upstream 265644 5717199 ~ 5717701 (+)
G1702856 NA other upstream 728460 5254165 ~ 5254885 (+)
LOC110516940 LOC106609861 other upstream 794498 5182911 ~ 5200193 (+)
G1702793 NA other upstream 928881 5052447 ~ 5054464 (+)
G1703953 NA other downstream 411222 6406032 ~ 6406773 (+)
G1704232 NA other downstream 1012359 7007169 ~ 7007740 (+)
G1704409 NA other downstream 1154590 7149400 ~ 7149993 (+)

Expression


Co-expression Network