G1703498


Basic Information

Item Value
gene id G1703498
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 6066559 ~ 6067288 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1950133
tgGATTGGGGTATCATTGTAAAGCCAGTGTTTGGTTGTTGGGAAACAAACAAAGTCAACTTTTGTACATGTCGTCCATTGTGACCTTGTAAgggcctcccctcccccctcctcctctgacaACCCTTAGTCTCTATGGCCAGTCTCTAATAGCCAGTCTCTATGGCTATTCTGTACAGCTGAGAAACGGTCCCTTCCAGGTTGAACGTTGGTTGTTGGTTGGTTATATACACGTTAGGGCTCTGAcattggagaggaagagagagagagagagagagttgtagtaGTGCTTTTTGTGTCTGATTGGATGGCTTTCCTCCTTCCTTCAGTCTGATTGGATggctctcctccttccttccttcagtcTGATTGGATGGATCTCCACCTCCTTCCTTCAGTCTGATTggatgtctctcctcctcctcccttcagtCTGATTggatgtctctcctcctccttccttcagccTGATTggatgtctctcctcctcctcccttcagtCTGATTGGatggctctcctcctcctcccttcagtctctctctgctctcctcaatcccatcaccccccccccccccccctctctctctctctgctcttcatCTGTAGTCAGCGAACCTGCGGGGCGTATCCCTCCTTCATCAGCCCCTCCTCGTAGTCCGTCTGACACAGGATCATATTGTTCTTCAGGAAGAACTTATCTCCCACACAAA

Function

NR:

description
hypothetical protein cypCar_00021369, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1950133 True 710 lncRNA 0.51 2 6066559 6067288

Neighbor

gene id symbol gene type direction distance location
LOC110527635 LOC106590880 coding upstream 72769 5986775 ~ 5993790 (+)
LOC118942842 LOC106575061 coding upstream 79918 5979351 ~ 5986641 (+)
LOC118936346 dera coding upstream 187268 5865290 ~ 5879297 (+)
LOC110519381 LOC106576618 coding upstream 409972 5611886 ~ 5657179 (+)
LOC118942839 NA coding upstream 471162 5593681 ~ 5595397 (+)
mrps33 mrps33 coding downstream 160793 6228081 ~ 6252333 (+)
LOC110500907 braf coding downstream 192525 6259813 ~ 6304321 (+)
LOC118942844 large1 coding downstream 645632 6712920 ~ 6879730 (+)
LOC118942849 arhgap8 coding downstream 1460239 7527527 ~ 7561975 (+)
LOC118942991 NA coding downstream 1494056 7561344 ~ 7574758 (+)
G1703499 NA non-coding upstream 132 6053504 ~ 6066427 (+)
G1703490 NA non-coding upstream 36294 6029339 ~ 6030265 (+)
G1703483 NA non-coding upstream 52842 6011366 ~ 6013717 (+)
G1703478 NA non-coding upstream 67521 5998632 ~ 5999038 (+)
G1703435 NA non-coding upstream 115476 5950516 ~ 5951083 (+)
G1703503 NA non-coding downstream 173 6067461 ~ 6068455 (+)
G1703527 NA non-coding downstream 78244 6145532 ~ 6146398 (+)
G1703537 NA non-coding downstream 99879 6167167 ~ 6168355 (+)
G1703786 NA non-coding downstream 124642 6191930 ~ 6193531 (+)
G1703792 NA non-coding downstream 136003 6203291 ~ 6227144 (+)
G1703427 LOC106590880 other upstream 71749 5983345 ~ 5994810 (+)
G1703391 NA other upstream 348858 5717199 ~ 5717701 (+)
LOC110511233 LOC107655547 other upstream 470131 5563222 ~ 5598052 (+)
G1702856 NA other upstream 811674 5254165 ~ 5254885 (+)
LOC110516940 LOC106609861 other upstream 877712 5182911 ~ 5200193 (+)
G1703953 NA other downstream 338744 6406032 ~ 6406773 (+)
G1704232 NA other downstream 939881 7007169 ~ 7007740 (+)
G1704409 NA other downstream 1082112 7149400 ~ 7149993 (+)

Expression


Co-expression Network