G1703503


Basic Information

Item Value
gene id G1703503
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 6067461 ~ 6068455 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1950140
aaacaattacaatatagacaatcattgatcagtgagcacacgcagagcaacatagaacaagcaagacgtagcatacagacagagcaacatagaacaagcaagacatagcatacagacagagcaacatagaacaagcaagacgtagcattcagacagagcaacatagaacaagcaagacatagcatacaga
>TU1950141
cagacgtagcatacagacagagcaacatagaacaagcaagacgtagcatacagacagagcaacataggacaagcaagacgtagcatacagacagagcaacatagaacaagcaagacgtagcatacagacagagcaacatagaacaagcaagacatagcatacagacagagcaacatagaacaagcaagacgtagcattcagacagagcaacatagaacaagcaagacatagcatacaga
>TU1950142
cagacgtagcatacagacagagcaacatagaacaagcaagacgtagcatacagacagagcaacataggacaagcaagacgtagcatacagacagagcaacatagaacaagcaagacgtagcatacagacagagcaacatagaacaagcaagacatagcatacagacagagcaacatagaacaagcaagacgtagcattcagacagagcaacataggacaagcaagacatagcat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1950140 False 190 lncRNA 0.40 3 6067461 6068238
TU1950141 False 239 lncRNA 0.43 2 6067963 6068238
TU1950142 True 234 lncRNA 0.44 3 6067963 6068455

Neighbor

gene id symbol gene type direction distance location
LOC110527635 LOC106590880 coding upstream 73671 5986775 ~ 5993790 (+)
LOC118942842 LOC106575061 coding upstream 80820 5979351 ~ 5986641 (+)
LOC118936346 dera coding upstream 188170 5865290 ~ 5879297 (+)
LOC110519381 LOC106576618 coding upstream 410874 5611886 ~ 5657179 (+)
LOC118942839 NA coding upstream 472064 5593681 ~ 5595397 (+)
mrps33 mrps33 coding downstream 159626 6228081 ~ 6252333 (+)
LOC110500907 braf coding downstream 191358 6259813 ~ 6304321 (+)
LOC118942844 large1 coding downstream 644465 6712920 ~ 6879730 (+)
LOC118942849 arhgap8 coding downstream 1459072 7527527 ~ 7561975 (+)
LOC118942991 NA coding downstream 1492889 7561344 ~ 7574758 (+)
G1703498 NA non-coding upstream 173 6066559 ~ 6067288 (+)
G1703499 NA non-coding upstream 1034 6053504 ~ 6066427 (+)
G1703490 NA non-coding upstream 37196 6029339 ~ 6030265 (+)
G1703483 NA non-coding upstream 53744 6011366 ~ 6013717 (+)
G1703478 NA non-coding upstream 68423 5998632 ~ 5999038 (+)
G1703527 NA non-coding downstream 77077 6145532 ~ 6146398 (+)
G1703537 NA non-coding downstream 98712 6167167 ~ 6168355 (+)
G1703786 NA non-coding downstream 123475 6191930 ~ 6193531 (+)
G1703792 NA non-coding downstream 134836 6203291 ~ 6227144 (+)
G1703799 NA non-coding downstream 184939 6253394 ~ 6253927 (+)
G1703427 LOC106590880 other upstream 72651 5983345 ~ 5994810 (+)
G1703391 NA other upstream 349760 5717199 ~ 5717701 (+)
LOC110511233 LOC107655547 other upstream 471033 5563222 ~ 5598052 (+)
G1702856 NA other upstream 812576 5254165 ~ 5254885 (+)
LOC110516940 LOC106609861 other upstream 878614 5182911 ~ 5200193 (+)
G1703953 NA other downstream 337577 6406032 ~ 6406773 (+)
G1704232 NA other downstream 938714 7007169 ~ 7007740 (+)
G1704409 NA other downstream 1080945 7149400 ~ 7149993 (+)

Expression


Co-expression Network