G1703812


Basic Information

Item Value
gene id G1703812
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 6251335 ~ 6252327 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1950641
CAGATTTGTTTTCAGGATTTTATTCATGACACCTGGTGTTACTCAGAACAGATGTAAAACACCAGCTATGTCTCAGTCAATAGGAACGTACCAGCATCACAGTTCTATGTACTGATGCCCTCCAGATCTCCTTCACCCGTTCACTGTACAGAGACTATGAGAACAGATGTAAAACACCAGCTATGTCTCAGTCAATAGGAACATACCAGCATCACAGTTCTATGTACTGATGCCCTCCAGATCTCCTTCACCCGTTCACTGTACAGAGACTATGAGAACAGAAAGCTGATAACAACGTGGACACAAGTGAAACGTCTCGTCAAGCAATGAACAGAAAGGCTTtatgtaccacacacacagcgGTCAAAGACTGGTCACTTGTCAGACAGGATCTCCTGTGATGGGGTCATGAAAGGATCCTCTCAACACACATCATTAGCTGTTCCAAGGATCCATTCATTATGAACATCCTGAGTGGGGGTCACATGTTACCGTTGTGAACACAGTTAGGGAGGCCATTCCTCTGGTGTCCCAAAGCAAACGAGGACTGTTGTGATTCCCCCATAGGTCCTATATGACAGGGCAAGGCTGGGTTTATCCACAGGTCCTATATGACAGGGCAAGGATGGGTTTATCCACAGGTCCTATATGACAGGGCAAGGCTGGGTTTATCCACAGGTCCTATATGACAGGGAAAGGAAGAGCTCATTTCTTCTTGGTGGCTCTCTTTCCCTCACCCTTCTTGGGTTTCCCCTTGCCTCTCAGTTTCCTCAGCCGACGCATCTCCTCCTTGAAGTCCTCGTGTTCA
>TU1950642
CAGATTTGTTTTCAGGATTTTATTCATGACACCTGGTGTTACTCAGAACAGATGTAAAACACCAGCTATGTCTCAGTCAATAGGAACGTACCAGCATCACAGTTCTATGTACTGATGCCCTCCAGATCTCCTTCACCCGTTCACTGTACAGAGACTATGAGAACAGATGTAAAACACCAGCTATGTCTCAGTCAATAGGAACATACCAGCATCACAGTTCTATGTACTGATGCCCTCCAGATCTCCTTCACCCGTTCACTGTACAGAGACTATGAGAACAGAAAGCTGATAACAACGTGGACACAAGTGAAACGTCTCGTCAAGCAATGAACAGAAAGGCTTtatgtaccacacacacagcgGTCAAAGACTGGTCACTTGTCAGACAGGATCTCCTGTGATGGGGTCATGAAAGGATCCTCTCAACACACATCATTAGCTGTTCCAAGGATCCATTCATTATGAACATCCTGAGTGGGGGTCACATGTTACCGTTGTGAACACAGTTAGGGAGGCCATTCCTCTGGTGTCCCAAAGCAAACGAGGACTGTTGTGATTCCCCCATAGGTCCTATATGACAGGGCAAGGCTGGGTTTATCCACAGGTCCTATATGACAGGGCAAGGATGGGTTTATCCACAGGTCCTATATGACAGGGCAAGGCTGGGTTTATCCACAGGTCCTATATGACAGGGCAAGGCTGGGTTTATCCACAGGTCCTATATGACAGGGAAAGGAAGAGCTCATTTCTTCTTGGTGGCTCTCTTTCCCTCACCCTTCTTGGGTTTCCCCTTGCCTCTCAGTTTCCTCAGCCGACGCATCTCCTCCTTGAAGTCCTCGTGTTCA
>TU1950643
CAGATTTGTTTTCAGGATTTTATTCATGACACCTGGTGTTACTCAGAACAGATGTAAAACACCAGCTATGTCTCAGTCAATAGGAACGTACCAGCATCACAGTTCTATGTACTGATGCCCTCCAGATCTCCTTCACCCGTTCACTGTACAGAGACTATGAGAACAGATGTAAAACACCAGCTATGTCTCAGTCAATAGGAACATACCAGCATCACAGTTCTATGTACTGATGCCCTCCAGATCTCCTTCACCCGTTCACTGTACAGAGACTATGAGAACAGAAAGCTGATAACAACGTGGACACAAGTGAAACGTCTCGTCAAGCAATGAACAGAAAGGCTTtatgtaccacacacacagcgGTCAAAGACTGGTCACTTGTCAGACAGGATCTCCTGTGATGGGGTCATGAAAGGATCCTCTCAACACACATCATTAGCTGTTCCAAGGATCCATTCATTATGAACATCCTGAGTGGGGGTCACATGTTACCGTTGTGAACACAGTTAGGGAGGCCATTCCTCTGGTGTCCCAAAGCAAACGAGGACTGTTGTGATTCCCCCATAGGTCCTATATGACAGGGCAAGGCTGGGTTTATCCACAGGTCCTATATGACAGGGCAAGGCTGGGTTTATCCACAGGTCCTATATGACAGGGCAAGGCTGGGTTTATCCACAGGTCCTATATGACAGGGAAAGGAAGAGCTCATTTCTTCTTGGTGGCTCTCTTTCCCTCACCCTTCTTGGGTTTCCCCTTGCCTCTCAGTTTCCTCAGCCGACGCATCTCCTCCTTGAAGTCCTCGTGTTCA
>TU1950644
CAGATTTGTTTTCAGGATTTTATTCATGACACCTGGTGTTACTCAGAACAGATGTAAAACACCAGCTATGTCTCAGTCAATAGGAACGTACCAGCATCACAGTTCTATGTACTGATGCCCTCCAGATCTCCTTCACCCGTTCACTGTACAGAGACTATGAGAACAGATGTAAAACACCAGCTATGTCTCAGTCAATAGGAACATACCAGCATCACAGTTCTATGTACTGATGCCCTCCAGATCTCCTTCACCCGTTCACTGTACAGAGACTATGAGAACAGAAAGCTGATAACAACGTGGACACAAGTGAAACGTCTCGTCAAGCAATGAACAGAAAGGCTTtatgtaccacacacacagcgGTCAAAGACTGGTCACTTGTCAGACAGGATCTCCTGTGATGGGGTCATGAAAGGATCCTCTCAACACACATCATTAGCTGTTCCAAGGATCCATTCATTATGAACATCCTGAGTGGGGGTCACATGTTACCGTTGTGAACACAGTTAGGGAGGCCATTCCTCTGGTGTCCCAAAGCAAACGAGGACTGTTGTGATTCCCCCATAGGTCCTATATGACAGGGCAAGGCTGGGTTTATCCACAGGTCCTATATGACAGGGCAAGGATGGGTTTATCCACAGGTCCTATATGACAGGGCAAGGATGGGTTTATCCACAGGTCCTATATGACAGGGCAAGGCTGGGTTTATCCACAGGTCCTATATGACAGGGAAAGGAAGAGCTCATTTCTTCTTGGTGGCTCTCTTTCCCTCACCCTTCTTGGGTTTCCCCTTGCCTCTCAGTTTCCTCAGCCGACGCATCTCCTCCTTGAAGTCCTCGTGTTCA
>TU1950645
CAGATTTGTTTTCAGGATTTTATTCATGACACCTGGTGTTACTCAGAACAGATGTAAAACACCAGCTATGTCTCAGTCAATAGGAACGTACCAGCATCACAGTTCTATGTACTGATGCCCTCCAGATCTCCTTCACCCGTTCACTGTACAGAGACTATGAGAACAGATGTAAAACACCAGCTATGTCTCAGTCAATAGGAACATACCAGCATCACAGTTCTATGTACTGATGCCCTCCAGATCTCCTTCACCCGTTCACTGTACAGAGACTATGAGAACAGAAAGCTGATAACAACGTGGACACAAGTGAAACGTCTCGTCAAGCAATGAACAGAAAGGCTTtatgtaccacacacacagcgGTCAAAGACTGGTCACTTGTCAGACAGGATCTCCTGTGATGGGGTCATGAAAGGATCCTCTCAACACACATCATTAGCTGTTCCAAGGATCCATTCATTATGAACATCCTGAGTGGGGGTCACATGTTACCGTTGTGAACACAGTTAGGGAGGCCATTCCTCTGGTGTCCCAAAGCAAACGAGGACTGTTGTGATTCCCCCATAGGTCCTATATGACAGGGCAAGGCTGGGTTTATCCACAGGTCCTATATGACAGGGCAAGGATGGGTTTATCCACAGGTCCTATATGACAGGGCAAGGCTGGGTTTATCCACAGGTCCTATATGACAGGGCAAGGCTGGGTTTATCCACAGGTCCTATATGACAGGGCAAGGCTGGGTTTATCCACAGGTCCTATATGACAGGGCAAGGATGGGTTTATCCACAGGTCCTATATGACAGGGCAAGGCTGGGTTTATCCACAGGTCCTATATGACAGGGAAAGGAAGAGCTCATTTCTTCTTGGTGGCTCTCTTTCCCTCACCCTTCTTGGGTTTCCCCTTGCCTCTCAGTTTCCTCAGCCGACGCATCTCCTCCTTGAAGTCCTCGTGTTCA
>TU1950646
CAGATTTGTTTTCAGGATTTTATTCATGACACCTGGTGTTACTCAGAACAGATGTAAAACACCAGCTATGTCTCAGTCAATAGGAACGTACCAGCATCACAGTTCTATGTACTGATGCCCTCCAGATCTCCTTCACCCGTTCACTGTACAGAGACTATGAGAACAGATGTAAAACACCAGCTATGTCTCAGTCAATAGGAACATACCAGCATCACAGTTCTATGTACTGATGCCCTCCAGATCTCCTTCACCCGTTCACTGTACAGAGACTATGAGAACAGAAAGCTGATAACAACGTGGACACAAGTGAAACGTCTCGTCAAGCAATGAACAGAAAGGCTTtatgtaccacacacacagcgGTCAAAGACTGGTCACTTGTCAGACAGGATCTCCTGTGATGGGGTCATGAAAGGATCCTCTCAACACACATCATTAGCTGTTCCAAGGATCCATTCATTATGAACATCCTGAGTGGGGGTCACATGTTACCGTTGTGAACACAGTTAGGGAGGCCATTCCTCTGGTGTCCCAAAGCAAACGAGGACTGTTGTGATTCCCCCATAGGTCCTATATGACAGGGCAAGGCTGGGTTTATCCACAGGTCCTATATGACAGGGCAAGGATGGGTTTATCCACAGGTCCTATATGACAGGGCAAGGCTGGGTTTATCCACAGGTCCTATATGACAGGGCAAGGCTGGGTTTATCCACAGGTCCTATATGACAGGGCAAGGATGGGTTTATCCACAGGTCCTATATGACAGGGCAAGGCTGGGTTTATCCACAGGTCCTATATGACAGGGAAAGGAAGAGCTCATTTCTTCTTGGTGGCTCTCTTTCCCTCACCCTTCTTGGGTTTCCCCTTGCCTCTCAGTTTCCTCAGCCGACGCATCTCCTCCTTGAAGTCCTCGTGTTCA
>TU1950647
CAGATTTGTTTTCAGGATTTTATTCATGACACCTGGTGTTACTCAGAACAGATGTAAAACACCAGCTATGTCTCAGTCAATAGGAACGTACCAGCATCACAGTTCTATGTACTGATGCCCTCCAGATCTCCTTCACCCGTTCACTGTACAGAGACTATGAGAACAGATGTAAAACACCAGCTATGTCTCAGTCAATAGGAACATACCAGCATCACAGTTCTATGTACTGATGCCCTCCAGATCTCCTTCACCCGTTCACTGTACAGAGACTATGAGAACAGAAAGCTGATAACAACGTGGACACAAGTGAAACGTCTCGTCAAGCAATGAACAGAAAGGCTTtatgtaccacacacacagcgGTCAAAGACTGGTCACTTGTCAGACAGGATCTCCTGTGATGGGGTCATGAAAGGATCCTCTCAACACACATCATTAGCTGTTCCAAGGATCCATTCATTATGAACATCCTGAGTGGGGGTCACATGTTACCGTTGTGAACACAGTTAGGGAGGCCATTCCTCTGGTGTCCCAAAGCAAACGAGGACTGTTGTGATTCCCCCATAGGTCCTATATGACAGGGCAAGGCTGGGTTTATCCACAGGTCCTATATGACAGGGCAAGGATGGGTTTATCCACAGGTCCTATATGACAGGGCAAGGCTGGGTTTATCCACAGGTCCTATATGACAGGGCAAGGATGGGTTTATCCACAGGTCCTATATGACAGGGCAAGGCTGGGTTTATCCACAGGTCCTATATGACAGGGAAAGGAAGAGCTCATTTCTTCTTGGTGGCTCTCTTTCCCTCACCCTTCTTGGGTTTCCCCTTGCCTCTCAGTTTCCTCAGCCGACGCATCTCCTCCTTGAAGTCCTCGTGTTCA
>TU1950648
CAGATTTGTTTTCAGGATTTTATTCATGACACCTGGTGTTACTCAGAACAGATGTAAAACACCAGCTATGTCTCAGTCAATAGGAACGTACCAGCATCACAGTTCTATGTACTGATGCCCTCCAGATCTCCTTCACCCGTTCACTGTACAGAGACTATGAGAACAGATGTAAAACACCAGCTATGTCTCAGTCAATAGGAACATACCAGCATCACAGTTCTATGTACTGATGCCCTCCAGATCTCCTTCACCCGTTCACTGTACAGAGACTATGAGAACAGAAAGCTGATAACAACGTGGACACAAGTGAAACGTCTCGTCAAGCAATGAACAGAAAGGCTTtatgtaccacacacacagcgGTCAAAGACTGGTCACTTGTCAGACAGGATCTCCTGTGATGGGGTCATGAAAGGATCCTCTCAACACACATCATTAGCTGTTCCAAGGATCCATTCATTATGAACATCCTGAGTGGGGGTCACATGTTACCGTTGTGAACACAGTTAGGGAGGCCATTCCTCTGGTGTCCCAAAGCAAACGAGGACTGTTGTGATTCCCCCATAGGTCCTATATGACAGGGCAAGGCTGGGTTTATCCACAGGTCCTATATGACAGGGCAAGGATGGGTTTATCCACAGGTCCTATATGACAGGGCAAGGATGGGTTTATCCACAGGTCCTATATGACAGGGCAAGGCTGGGTTTATCCACAGGTCCTATATGACAGGGCAAGGATGGGTTTATCCACAGGTCCTATATGACAGGGCAAGGCTGGGTTTATCCACAGGTCCTATATGACAGGGAAAGGAAGAGCTCATTTCTTCTTGGTGGCTCTCTTTCCCTCACCCTTCTTGGGTTTCCCCTTGCCTCTCAGTTTCCTCAGCCGACGCATCTCCTCCTTGAAGTCCTCGTGTTCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1950641 False 808 lncRNA 0.47 2 6251335 6252327
TU1950642 False 845 lncRNA 0.47 2 6251335 6252327
TU1950643 False 808 lncRNA 0.47 3 6251335 6252327
TU1950644 False 845 lncRNA 0.47 3 6251335 6252327
TU1950645 False 956 lncRNA 0.48 2 6251335 6252327
TU1950646 False 919 lncRNA 0.47 2 6251335 6252327
TU1950647 False 882 lncRNA 0.47 3 6251335 6252327
TU1950648 True 919 lncRNA 0.47 2 6251335 6252327

Neighbor

gene id symbol gene type direction distance location
LOC110499738 lmo3 coding downstream 62525 6067135 ~ 6188810 (-)
LOC118942843 NA coding downstream 299724 5950034 ~ 5963423 (-)
LOC118942841 NA coding downstream 429045 5687945 ~ 5822290 (-)
LOC118942840 NA coding downstream 565119 5652498 ~ 5686229 (-)
LOC110511232 wif1 coding downstream 689912 5496219 ~ 5561423 (-)
LOC118942797 NA coding upstream 265561 6517888 ~ 6518853 (-)
LOC118942845 LOC106590959 coding upstream 638196 6890523 ~ 6917536 (-)
LOC118942846 LOC105029310 coding upstream 796569 7048896 ~ 7050907 (-)
LOC118942847 LOC106593057 coding upstream 1051278 7303605 ~ 7307397 (-)
LOC118942848 LOC106594098 coding upstream 1128252 7379889 ~ 7384439 (-)
G1703805 NA non-coding downstream 22828 6228129 ~ 6228507 (-)
G1703794 NA non-coding downstream 24378 6202465 ~ 6226957 (-)
G1703784 NA non-coding downstream 71175 6179763 ~ 6180160 (-)
G1703780 NA non-coding downstream 76801 6173026 ~ 6174534 (-)
G1703773 NA non-coding downstream 93917 6157109 ~ 6157418 (-)
G1703851 NA non-coding upstream 3585 6255912 ~ 6256980 (-)
G1703852 NA non-coding upstream 5099 6257426 ~ 6258382 (-)
G1703854 NA non-coding upstream 6641 6258968 ~ 6259180 (-)
G1703859 NA non-coding upstream 15348 6267675 ~ 6268001 (-)
G1703877 NA non-coding upstream 52106 6304433 ~ 6339833 (-)
G1703669 NA other downstream 254909 5984365 ~ 5996426 (-)
G1703658 NA other downstream 351554 5899342 ~ 5899781 (-)
LOC110491889 b2m other downstream 795224 5452948 ~ 5456355 (-)
G1703323 NA other downstream 821163 5429468 ~ 5430889 (-)
G1703878 NA other upstream 53226 6305553 ~ 6308220 (-)
G1703896 NA other upstream 90414 6342741 ~ 6343182 (-)
G1704098 NA other upstream 448571 6700898 ~ 6705845 (-)
G1704410 NA other upstream 897238 7149565 ~ 7149979 (-)
G1704412 NA other upstream 904363 7156690 ~ 7157057 (-)

Expression


Co-expression Network