G1704442


Basic Information

Item Value
gene id G1704442
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 7353900 ~ 7355948 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1951444
TATTTATACCAGTACATCTGACTGGGTGGTGATATCTATACCAGTACATCTGACTGGGTGGTGATATTTATACCATCTGACTGGGTGGTGATATCTATACCATCTGACTGGGTTGTGATATCTATACCAGTACATCTGACTGGGTTGGTGGTGATATCTATACCATCTGACTGGGTTGTGATATCTATACCAGTACATCTGACTGGGTTGGTGGTGATATCTATACCAGTACATCTGACTGGGTGGTGATATCTATGCCATCTGACTGGGTGGTGATATCTATACCAGTACATCTGACTGGGTGGTGATATCGATACCATCTGACTGGGTGGTGATATCTATACCATCTGACTGGGTGGTGATATCTATACCAGTACATCTGACTGGGTTGATGGTGATATCTATACCAGTACATCTGACTGGGTTGATGGTGATATCTATACCATCTGACTGGGTGGTGGTATCTATACCATCTGACTGGGTGGTGATATCTATACCAGTACATCTGACTGGGTTGATGGTGATATCTATACCAGTACATCTGACTGGGTGGTGATATATATACCATCTGACTGGGTGGTGATATCTATACCATCTGACTGGGTGGTGATATCTATACCAGTACATCTGACTGGGCAGTAGGTGCAGTAGGGGCAGTAGGGGGTAGTAGGGGGCAGTAGGGGCAGTAGGGGTAGTGGGGGCAGTAGTATATCAGTGGTGATATCTATACCAGTACATCTGACTGGATTGATGGTGATATCTATACCATCTGACTGGGTGGTGATATCTATACCAGTATATCTGACTGGGTGGTGGTAACACTGGGTGACGTAGTCAACACTGGGTGACGTAGTAACCATAGTTACAAGGGGTGACATAGTTAACACTGGGTGACGTAGTAACCATAGTTACACGGGGTGACACTGGGTGGCGTAGTAGACATAGTTAACATAGAGACATGGTCTGAGAACCAGTCATTCAAGCTCGCGTACCAAACCGTTTTGccatggggggaaaaaaaatgaaaatgagtgtttcttattggacaactcAAGGTTGTCACCTCCCTGTTTTCTTCCCTTGGAACACGACCCAGAGGTTACAGCTGCTGTTTAAAACTAAACGTGACGCGGACACTGAGGTAGATGCCTTCAATCAATTAACAGTGATCAATTAACAGTGATCAATTAACAGTGATCAATTAACAGTGATCAATTAACAGTGATACAGCATTCTGatcaaaaacaatcaatcaatcatttaaatgattaaaaaaataacaaataaacatATGAACATTCGTCAAAACCCCTGCAGCAGATTCATACTGATGACGTCATATCCCTGCGCCGGAAAATGGGATGTTTAATGTCGTGTTCACTTGCTAGTCGGAAAACTAGGAAATTCAGACTTTCTAACTGGTTGAACGTGTTTAATAACCACAACCGGTCAGCATGTCGGACAGTTCCAAGTTCCGATTAGCACGTGAACACGGAACATGATTGTTTTGAAAGGAAGCCATTTTGTTTTCGTCACCCTCTACCTGCCTGCCATGTTCTCATCAAGGCAAAACATTTTATCAACatcaaaaatttttttttttaaaaacataattGAATGTTATAAATCTATCAAATAAAATGTCCAGTTTTAAACCAATCCCTTTtcatataaaacatatatatatatcgtaCCTTAAAAAAATAGAGATTTAACAATGCAATAACTCCACGAGTCTCAACAGAGCCGAGAAGAACAGATAGGTATTTTTTAGAACAGTTTGTTGACACAGAATTAAAACTACGGTCTGTCTTTATTTCTGGCTTACCAGCTGTACATGTTTTCAATAATATGTTTTAGTACCAGAACATGATATGATTCGATGTCTACATACAGAACATCGTCTTATTGATGTCATATCTATACAGAACATGATATGATTCGATGTCTACATACAGAACATCGTCTTCTTGATGTCATATCTATACAGAACATGATATGATTCGATGTCTACATACAGAACATCGTCTTATTGATGTCATATCTATA
>TU1951445
TCCAGTTTTAAACCAATCCCTTTtcatataaaacatatatatatatcgtaCCTTAAAAAAATAGAGATTTAACAATGCAATAACTCCACGAGTCTCAACAGAGCCGAGAAGAACAGATAGGTATTTTTTAGAACAGTTTGTTGACACAGAATTAAAACTACGGTCTGTCTTTATTTCTGGCTTACCAGCTGTACATGTTTTCAATAATATGTTTTAGTACCAGAACATGATATGATTCGATGTCTACATACAGAACATCGTCTTATTGATGTCATATCTATACAGAACATGATATGATTCGATGTCTACATACAGAACATCGTCTTCTTGATGTCATATCTATACAGAACATGATATGATTCGATGTCTACATACAGAACATCGTCTTATTGATGTCATATCTATA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1951444 False 2049 lncRNA 0.40 1 7353900 7355948
TU1951445 True 406 lncRNA 0.32 1 7355543 7355948

Neighbor

gene id symbol gene type direction distance location
LOC118942844 large1 coding upstream 474170 6712920 ~ 6879730 (+)
LOC110500907 braf coding upstream 1049579 6259813 ~ 6304321 (+)
mrps33 mrps33 coding upstream 1101567 6228081 ~ 6252333 (+)
LOC110527635 LOC106590880 coding upstream 1360110 5986775 ~ 5993790 (+)
LOC118942842 LOC106575061 coding upstream 1367259 5979351 ~ 5986641 (+)
LOC118942849 arhgap8 coding downstream 171579 7527527 ~ 7561975 (+)
LOC118942991 NA coding downstream 205396 7561344 ~ 7574758 (+)
LOC110510398 LOC106591976 coding downstream 444718 7800666 ~ 7829915 (+)
LOC118942850 NA coding downstream 447332 7803280 ~ 7805680 (+)
LOC118936573 LOC105026518 coding downstream 517667 7873615 ~ 7878590 (+)
G1704443 NA non-coding upstream 663 7305977 ~ 7353237 (+)
G1704462 NA non-coding upstream 7494 7345223 ~ 7346406 (+)
G1704461 NA non-coding upstream 20233 7333320 ~ 7333667 (+)
G1704456 NA non-coding upstream 26544 7326483 ~ 7327356 (+)
G1704440 NA non-coding upstream 62105 7291097 ~ 7291795 (+)
G1704445 NA non-coding downstream 158 7356106 ~ 7359490 (+)
G1704467 NA non-coding downstream 5226 7361174 ~ 7361387 (+)
G1704474 NA non-coding downstream 21204 7377152 ~ 7377382 (+)
G1704475 NA non-coding downstream 22129 7378077 ~ 7378303 (+)
G1704478 NA non-coding downstream 23909 7379857 ~ 7381471 (+)
G1704409 NA other upstream 203907 7149400 ~ 7149993 (+)
G1704232 NA other upstream 346160 7007169 ~ 7007740 (+)
G1703953 NA other upstream 947127 6406032 ~ 6406773 (+)
G1704562 NA other downstream 301481 7657429 ~ 7657869 (+)
G1704651 NA other downstream 493612 7849560 ~ 7850120 (+)
LOC118942994 LOC106591951 other downstream 1182980 8538928 ~ 8564807 (+)
G1705229 NA other downstream 1494450 8850398 ~ 8851107 (+)

Expression


Co-expression Network