G1704478


Basic Information

Item Value
gene id G1704478
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 7379857 ~ 7381471 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1951493
GTGACTGTCTCTCCTGCAGCGGCCATCGTCCCACGTCATAACTCCAGGAGACGTTGTAGTCCGGGCGTCTGAGCAGTTGGCTGCCCTGTTGCATCATCCAAGGGTCTGTTGGTCTATGTCGTTTTTTTTTGCTATTGATTCCAACCTGATTGGCTTCTGCATCTGTCATCTGCAGCAGGTCCCCGCCCCCTCCCCTGGTAAATCCAACCAACGGGGGGGGAGCTGAGTCAGTCATCCGTACGCTCGTGACGCAGTGACGTCTGTCAGAATCTATTCCAAAGGTTCTATGATTCCACCTCTTTTAGCTGAGATGCACCACAGCATGACTGGTAGAAAGGGGTTGGAGGGGGTTCAGGTGATATGGGGAGGGGGTTCAGGTGATATGGGGGTGGTGACGGGGGTTGGAGGGGGGTCAGTGTAGTCTGGTGATATGGTGATGGAGAAGGGGGATGTAGGGGTTGGAGGGGGGCAGTGTTGTCAGGTAGTAATCCACTGTAGCGAAGTGATATGATGATGTCATACGACATCAGAAGACAAGGTGACCTGAAATGTCGTCGGGCCTGGAACGCCAGGTGACTTGATATAATGACGCTGTTGATTTAAGTGGCCAGTAAGCTGTGGCCTCGGAGTCAGGGGAGGGTTTTTACCGATGACAATATGGGTTTCTATTGATTCTGATATCAATACATTTCTGCCTGCAGTATAGGTCTCTGCCTGTCTACACTACACCATATATAACCATTCATCCCAGGACAAGGACATAGCTGCCAAAATCATCTCGGTTATTATTGAATCACATTTCTACGTAACTCCAGTCGGGCGCTGTGTAGCAGCattcattggggggggggggggtacaatgAAAACACCTTCAACCAGGTCGTCAGTCAAATCCTTCCGTTCCTCTGTTCTGTTTGACGTCAGACAATAACGTCTTTCCCCTGTCAGAACGGTCTTGGAAGGTTGCTATAGAAACTAACCGGCTTCCACACCACGTCTGCAGTTCCCGAACTCTCCACAGAGCGGCGCTCTGGGTCCATCTGACCGCCTGTCTGAG
>TU1951494
GTGACTGTCTCTCCTGCAGCGGCCATCGTCCCACGTCATAACTCCAGGAGACGTTGTAGTCCGGGCGTCTGAGCAGTTGGCTGCCCTGTTGCATCATCCAAGGGTCTGTTGGTCTATGTCGTTTTTTTTTGCTATTGATTCCAACCTGATTGGCTTCTGCATCTGTCATCTGCAGCAGGTCCCCGCCCCCTCCCCTGGTAAATCCAACCAACGGGGGGGGAGCTGAGTCAGTCATCCGTACGCTCGTGACGCAGTGACGTCTGTCAGAATCTATTCCAAAGGTTCTATGATTCCACCTCTTTTAGCTGAGATGCACCACAGCATGACTGGTAGAAAGGGGTTGGAGGGGGTTCAGGTGATATGGGGAGGGGGTTCAGGTGATATGGGGGTGGTGACGGGGGTTGGAGGGGGGTCAGGTGATATGGGGAGGGGGTTCAGTGGAGTCAGGTGATATGGGGATGGGGGTTGGAGGGGGTCAGGTGATATGGGGATGGGGGTTGGAG
>TU1951495
AGGGGGTCAGGTGACATGGTGATGGGGAAGGGGGTTGGAGGGGGGCAGGTGATATGGGGATGGGGGTTGGAGGGGGTTCAGTGGAGTCAGGTGACATGGTGATGGGGGTTGGAGGGGGTCAGGTGACATGGTGATGGGGAAGGGGGTTGGAGGGGGGCAGGTGACATGGTGATGGGGAAGGGGGTTGGAGGGGGGCAGGTGATATGGGGAAGGGGGTTGGAGGGTGTCAGGTGACATGGTGATGGAGAAGGGGGAATGAGGGGGGTCAGTGTAGTCTGGTGATATGGTGATGGAGAAGGGGGATGTAGGGGTTGGAGGGGGGCAGTGTAGTCTGGTGATATGGTGATGGAGAAGGGGGATGTAGGGGTTGGAGGGGGGCAGTGTTGTCAGGTAGTAATCCACTGTAGCGAAGTGATATGATGATGTCATACGACATCAGAAGACAAGGTGACCTGAAATGTCGTCGGGCCTGGAACGCCAGGTGACTTGATATAATGACGCTGTTGATTTAAGTGGCCAGTAAGCTGTGGCCTCGGAGTCAGGGGAGGGTTTTTACCGATGACAATATGGGTTTCTATTGATTCTGATATCAATACATTTCTGCCTGCAGTATAGGTCTCTGCCTGTCTACACTACACCATATATAACCATTCATCCCAGGACAAGGACATAGCTGCCAAAATCATCTCGGTTATTATTGAATCACATTTCTACGTAACTCCAGTCGGGCGCTGTGTAGCAGCattcattggggggggggggggtacaatgAAAACACCTTCAACCAGGTCGTCAGTCAAATCCTTCCGTTCCTCTGTTCTGTTTGACGTCAGACAATAACGTCTTTCCCCTGTCAGAACGGTCTTGGAAGGTTGCTATAGAAACTAACCGGCTTCCACACCACGTCTGCAGTTCCCGAACTCTCCACAGAGCGGCGCTCTGGGTCCATCTGACCGCCTGTCTGAG
>TU1951496
AGGGGGTCAGGTGACATGGTGATGGGGAAGGGGGTTGGAGGGGGGCAGTGGAGTCAGGTGACATGGTGATGGGGGTTGGAGGGGGTCAGGTGACATGGTGATGGGGAAGGGGGTTGGAGGGGGGCAGGTGATATGGGGATGGGGAAGGGGGTTGGAGGGGGTCAGTAGAGTCAGGTGACATGGTGATGGGGAAGGGGGTTGGAGGGGGGCAGGTGATATGGGGAAGGGGGTTGGAGAGGGGTCAGTAGAATCAGGTGACATGGTGATGGGGAAGGGGGTTGGAGGGTGTCAGGTGACATGGTGATGGAGAAGGGGGAATGAGGGGGGTCAGTGTAGTCTGGTGATATGGTGATGGAGAAGGGGGATGTAGGGGTTGGAGGGGGGCAGTGTAGTCTGGTGATATGGTGATGGAGAAGGGGGATGTAGGGGTTGGAGGGGGGCAGTGTTGTCAGGTAGTAATCCACTGTAGCGAAGTGATATGATGATGTCATACGACATCAGAAGACAAGGTGACCTGAAATGTCGTCGGGCCTGGAACGCCAGGTGACTTGATATAATGACGCTGTTGATTTAAGTGGCCAGTAAGCTGTGGCCTCGGAGTCAGGGGAGGGTTTTTACCGATGACAATATGGGTTTCTATTGATTCTGATATCAATACATTTCTGCCTGCAGTATAGGTCTCTGCCTGTCTACACTACACCATATATAACCATTCATCCCAGGACAAGGACATAGCTGCCAAAATCATCTCGGTTATTATTGAATCACATTTCTACGTAACTCCAGTCGGGCGCTGTGTAGCAGCattcattggggggggggggggtacaatgAAAACACCTTCAACCAGGTCGTCAGTCAAATCCTTCCGTTCCTCTGTTCTGTTTGACGTCAGACAATAACGTCTTTCCCCTGTCAGAACGGTCTTGGAAGGTTGCTATAGAAACTAACCGGCTTCCACACCACGTCTGCAGTTCCCGAACTCTCCACAGAGCGGCGCTCTGGGTCCATCTGACCGCCTGTCTGAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1951493 False 1057 lncRNA 0.51 3 7379857 7381471
TU1951494 False 503 lncRNA 0.56 2 7379857 7380381
TU1951495 False 966 lncRNA 0.53 3 7380411 7381471
TU1951496 True 1028 lncRNA 0.54 2 7380411 7381471

Neighbor

gene id symbol gene type direction distance location
LOC118942844 large1 coding upstream 500127 6712920 ~ 6879730 (+)
LOC110500907 braf coding upstream 1075536 6259813 ~ 6304321 (+)
mrps33 mrps33 coding upstream 1127524 6228081 ~ 6252333 (+)
LOC110527635 LOC106590880 coding upstream 1386067 5986775 ~ 5993790 (+)
LOC118942842 LOC106575061 coding upstream 1393216 5979351 ~ 5986641 (+)
LOC118942849 arhgap8 coding downstream 146056 7527527 ~ 7561975 (+)
LOC118942991 NA coding downstream 179873 7561344 ~ 7574758 (+)
LOC110510398 LOC106591976 coding downstream 419195 7800666 ~ 7829915 (+)
LOC118942850 NA coding downstream 421809 7803280 ~ 7805680 (+)
LOC118936573 LOC105026518 coding downstream 492144 7873615 ~ 7878590 (+)
G1704475 NA non-coding upstream 1554 7378077 ~ 7378303 (+)
G1704474 NA non-coding upstream 2475 7377152 ~ 7377382 (+)
G1704467 NA non-coding upstream 18470 7361174 ~ 7361387 (+)
G1704445 NA non-coding upstream 20367 7356106 ~ 7359490 (+)
G1704442 NA non-coding upstream 23909 7353900 ~ 7355948 (+)
G1704479 NA non-coding downstream 8426 7389897 ~ 7391229 (+)
G1704486 NA non-coding downstream 23672 7405143 ~ 7405889 (+)
G1704500 NA non-coding downstream 80829 7462300 ~ 7463881 (+)
G1704502 NA non-coding downstream 85348 7466819 ~ 7471190 (+)
G1704409 NA other upstream 229864 7149400 ~ 7149993 (+)
G1704232 NA other upstream 372117 7007169 ~ 7007740 (+)
G1703953 NA other upstream 973084 6406032 ~ 6406773 (+)
G1704562 NA other downstream 275958 7657429 ~ 7657869 (+)
G1704651 NA other downstream 468089 7849560 ~ 7850120 (+)
LOC118942994 LOC106591951 other downstream 1157457 8538928 ~ 8564807 (+)
G1705229 NA other downstream 1468927 8850398 ~ 8851107 (+)

Expression


Co-expression Network