G1704500


Basic Information

Item Value
gene id G1704500
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 7462300 ~ 7463881 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1951532
tagggctctactgttgaccaggtcctatagagctctactgttggccaggacccatagggctctactgttgaccagggcctatagggctctactgttgaccaggacccatagggctctactgttgaccaggacccatagggctctactgttgaccaggacccatagggctctactgttgaccaggacctatagagCTCTACTGTTGATCAGGATccatagtgctctactgttgaccaggaccatgttaataactgcagtacctcTATTAATAACTGCATTACCTCTTttaataactgcagtacctctctgttaataactgcagtacctctgttaataactgcagtacctcTGTTAATAACTGCATTACCtctgttaataactgcagtacctctgttaataactgcagtacctctgttaataactgcagtacctcTCTGTTATTAACTGCAGTACCTCCCTGTTAATAACTACAGTACTcctgttaataactgcagtacctccctgttaataactgcagtacctccctgttaataactgcagtacctcTGTTAATAATTGCAGTACccctgttaataactgcagtacctcTGTTAATAACTGTAGTTCCTCtctgttaataactgcagtacctccctgttaataactgcagtacctcTGTTAATAATTGCAGTACCTCCCTGTTAATAACTGTAGTTCCTCtctgttaataactgcagtacctccctgttaataactgcagtacctctctgttaataactgcagtacttccctgttaataactgcagtacctcTGTTAATAATTGCAGTACCtctgttaataactgcagtacctcTCTGTTAATAACTGTAGTTCCTCtctgttaataactgcagtacctctctgttaataactgcagtacctctctgttaataactgcagtacctctctgttaataactgcagtacctccctgttaataactgcagtacctccctgttaataactgcagtGCCTCTGATAATAACTGCAGTACCtctgttaataactgcagtacctccctgttaataactgcagtacctccctgttaataactgcagtacctctctgttaataactgcagtacctc

Function

NR:

description
Collagen-like protein 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1951532 True 1105 lncRNA 0.42 2 7462300 7463881

Neighbor

gene id symbol gene type direction distance location
LOC118942844 large1 coding upstream 582570 6712920 ~ 6879730 (+)
LOC110500907 braf coding upstream 1157979 6259813 ~ 6304321 (+)
mrps33 mrps33 coding upstream 1209967 6228081 ~ 6252333 (+)
LOC110527635 LOC106590880 coding upstream 1468510 5986775 ~ 5993790 (+)
LOC118942842 LOC106575061 coding upstream 1475659 5979351 ~ 5986641 (+)
LOC118942849 arhgap8 coding downstream 63646 7527527 ~ 7561975 (+)
LOC118942991 NA coding downstream 97463 7561344 ~ 7574758 (+)
LOC110510398 LOC106591976 coding downstream 336785 7800666 ~ 7829915 (+)
LOC118942850 NA coding downstream 339399 7803280 ~ 7805680 (+)
LOC118936573 LOC105026518 coding downstream 409734 7873615 ~ 7878590 (+)
G1704486 NA non-coding upstream 56411 7405143 ~ 7405889 (+)
G1704479 NA non-coding upstream 71071 7389897 ~ 7391229 (+)
G1704478 NA non-coding upstream 80829 7379857 ~ 7381471 (+)
G1704475 NA non-coding upstream 83997 7378077 ~ 7378303 (+)
G1704474 NA non-coding upstream 84918 7377152 ~ 7377382 (+)
G1704502 NA non-coding downstream 2938 7466819 ~ 7471190 (+)
G1704535 NA non-coding downstream 94425 7558306 ~ 7558770 (+)
G1704539 NA non-coding downstream 132057 7595938 ~ 7600472 (+)
G1704409 NA other upstream 312307 7149400 ~ 7149993 (+)
G1704232 NA other upstream 454560 7007169 ~ 7007740 (+)
G1703953 NA other upstream 1055527 6406032 ~ 6406773 (+)
G1704562 NA other downstream 193548 7657429 ~ 7657869 (+)
G1704651 NA other downstream 385679 7849560 ~ 7850120 (+)
LOC118942994 LOC106591951 other downstream 1075047 8538928 ~ 8564807 (+)
G1705229 NA other downstream 1386517 8850398 ~ 8851107 (+)

Expression


Co-expression Network