G1705357


Basic Information

Item Value
gene id G1705357
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 8445975 ~ 8463535 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1952800
gttaccatttgggatacagacagagataaggagtaggttaccatttgggatacagagagataaggagtaggttaccattggggatacagagagataaggagtaggttaccattggggatacagacagagataaggagtaggttaccattggggatacagacagaggtaaggagtaggttaccattggggatacagacagagataaggagtaggttaccatttgggatacagacagagataaggagtaggttaccattggggatacagagagataaggagtaggttaccattggggatacagagataaggagtaggttaccatttgggatacagacagagataaggagcaggttaccatttgggatacagagagataaggagtaggttaccattggggatacagacagagataaggagtaggttaccattggggatacagacagagataaggagtaggttaccatttgggatacagacagagataaggagtaggttaccattggggatacagacagagataaggagtaggttaccatttgggatacagacagagataaggagtaggttaccattggggatacagacagagatcagGAGTAgtttaccattggggatacagagagataaggagtaggttaccattggggatacagagagataaggagtaggttaccattggggatacagacagagataaggagtaggttaccattggggatacagacagagataaggagtaggttaccattggggatacagacagagataaggagtaggttaccatttgggatacagacagagataaggagtaggttaccattggggatacagagagataaggagtaggttaccattggggatacagagagagataaggagtaggttaccatttgggatagagagagataaggagtaggttaccatttgggatacagagagataaggagtaggttaccattggggatacagagatataaggagtaggttaccattggggatacagagagataaggagtaggttaccatttaggatagagacagagataaggagtaggttaccatttaggatagagacagagataaggagtaggttaccatttgggatacagacagagataaggagtaggttacaatttgggatacagacagagataaggagtaggttaccattggggatacagagagagaaa
>TU1952801
acagagagataaggagtaggttaccattggggatacagacagagataaggagtaggttaccatttgggatacagacagagataaggagtaggttaccatttgggatacagtcagagataaggagtaggttaccattggggatacagtcagagataaggagtaggttaccatttgggatacagacagagataaggagtaggttaccatttgggatacaaacagagataaggagtaggttaccattggggatacagacagagataaggagtaggttaccattggggatacagacagagataaggagtacgttaccattggggatacagtcagagataaggagtaggttaccatttgggatacagacagagataaggagtaggttaccatttgggatacagacagagataaggagtaggttaccattggggatacagagagagataaggagtaggttaccatttgggatagagagagataaggagtaggttaccatttgggatacagagagataaggagtaggttaccattggggatacagagatataaggagtaggttaccattggggatacagagagataaggagtaggttaccatttaggatagagacagagataaggagtaggttaccatttaggatagagacagagataaggagtaggttaccatttgggatacagacagagataaggagtaggttacaatttgggatacagacagagataaggagtaggttaccattggggatacagagagagaaa
>TU1952805
gttaccatttgggatacagacagagataaggagtaggttaccattggggatacagacagagataaggagtaggttaccatttgggatacagagagagataaggagtaggttaccattggggatacagagagataaggagtaggttaccattggggatacagacagagataaggagtaggttaccattggggatacagacagagataaggagtaggttaccattggggatacagacagagataaggagtaggttaccatttgggatacagacagagataaggagtaggttaccattggggatacagagagataaggagtaggttaccattggggatacagagagagataaggagtaggttaccatttgggatagagagagataaggagtaggttaccatttgggatacagagagataaggagtaggttaccattggggatacagagatataaggagtaggttaccattggggatacagagagataaggagtaggttaccatttaggatagagacagagataaggagtaggttaccatttaggatagagacagagataaggagtaggttaccatttgggatacagacagagataaggagtaggttacaatttgggatacagacagagataaggagtaggttaccattggggatacagagagagaaa
>TU1952798
accattggggatacagacagagataaggagtaggttaccatttgggatacagacagagataaggagcaggttaccatttgggatacagagagataaggagtaggttaccattggggatacagagagataaggagtaggttaccattggagatacagagagataaggagtaggttaccattggggatacagagagataaggagtaggttaccattggggatacagacagagataaggagtaggttaccatttgggatacagacagagataaggagtaggttaccatttgggatacagtcagagataaggagtaggttaccattggggatacagtcagagataaggagtaggttaccatttgggatacagacagagataaggagtaggttaccatttgggatacaaacagagataaggagtaggttaccatttgggatacagagagataaggagtaggttaccattggggatacagacagagataaggagtacgttaccattggggataccgagagataaggagtaggttaccattggggatacagacagagataaggagtaggttaccattggggatacagagagataaggagtaggttaccatttgggatacagagagataaggagtaggttaccattggggatacagacagagataaggagtaggttaccattggggatacagagagataaggagtaggttaccattggggatacagacagagataaggagtacgttaccattggggatacagtcagagataaggagtaggttaccattggggatacagacagagataaggagtaggttaccattggggatacagagagagataaggagtaggttgccattggggatacagagataaggagtaggttaccatttgggatacagacagagataaggagcaggttaccatttgggatacagagagataaggagtaggttaccattggggatacagagagataaggagtaggttaccatttgggatacagacagagataaggagtaggttaccatttgggatacagacagagataaggagtaggttaccattggggatacagacagagataaggagtaggttaccatttgggatacagacagagataaggagtaggttaccattggggatacagagagataaggagtaggttaccattggggatacagacagagataaggagtaggttaccatttgggatagagagagataaggagtaggttaccatttgggatagagacagagataaggagtaggttaccattggggatacagacagagataaggagtaggttaccattggggatacagacagagataaggagtaggttaccattggggatacagagagataaagagtaggttaccattggggatacagagagataaggagtaggttaccattggggatacagacagagataaggagtaggttaccattggggatacagagataaggagtaggttaccattggggatacagagataaggagtaggttaccatttgggatacagacagagataaggagcaggttaccatttgggatacagagagataaggagtaggttaccattggggatacagagagataaggagtaggttaccatttgggatacagacagagataaggagtaggttaccatttgggatacagacagagataaggagtaggttaccattggggatacagacagaga
>TU1952799
gttaccatttgggatacagacagagataaggagtaggttaccatttgggatacagagagataaggagtaggttaccattggggatacagagagataaggagtaggttaccattggggatacagacagagataaggagtaggttaccattggggatacagacagaggtaaggagtaggttaccattggggatacagacagagataaggagtaggttaccatttgggatacagacagagataaggagtaggttaccattggggatacagagagataaggagtaggttaccattggggatacagagataaggagtaggttaccatttgggatacagacagagataaggagcaggttaccatttgggatacagagagataaggagtaggttatcattggggatacagacagagataaggagtaggttaccattggggatacagagagataaggagtaggttaccattggggatacagacagagataaggagtaggttaccatttgggatacagacagagataaggagcaggttaccatttgggatacagagagataaggagtaggttaccattggggatacagagagataaggagtaggttaccatttgggatacagacagagataaggagtaggttaccatttgggatacagacagagataaggagtaggttaccattggggatacagacagaga
>TU1952808
gggatacagagagagataaggagtaggttaccattggggatacagagagataaggagtaggttaccattggggatacagagagataaggagtaggttaccattggggatacagagagataaggagtaggttaccattggggatacagacagagataaggagtaggttaccatttgggatacagacagagataaggagcaggttaccatttgggatacagagagataaggagtaggttaccattggggatacagagagataaggagtaggttaccatttgggatacagacagagataaggagtaggttaccatttgggatacagacagagataaggagtaggttaccattggggatacagacagaga
>TU1952806
accattggggatacagacagagataaggagtaggttaccatttgggatacagacagagataaggagcaggttaccatttgggatacagagagataaggagtaggttaccattggggatacagagagataaggagtaggttaccattggagatacagagagataaggagtaggttaccatttgggatacagagagataaggagtaggttaccattggggatacagacagagataaggagtacgttaccattggggatacagtcagagataaggagtaggttaccattggggatacagagagataaggagtaggttaccattggggatacagagagataaggagtaggttaccattggggatacagacagagagataaggagtaggttaccattggggatacagtcagagataaggagtaggttaccattggggatacagacagagataaggagtaggttaccattggggatacagagagagataaggagtaggttaccattggggatacagagagataaggagtaggttaccattggggatacagagagataaggagtaggttac
>TU1952796
accattggggatacagacagagataaggagtaggttaccatttgggatacagacagagataaggagcaggttaccatttgggatacagagagataaggagtaggttaccattggggatacagagagataaggagtaggttaccattggagatacagagagataaggagtaggttaccattggggatacagagagataaggagtaggttaccattggggatacagacagagataaggagtaggttaccatttgggatacagacagagataaggagtaggttaccatttgggatacagtcagagataaggagtaggttaccattggggatacagtcagagataaggagtaggttaccatttgggatacagacagagataaggagtaggttaccatttgggatacaaacagagataaggagtaggttaccatttgggatacagagagataaggagtaggttaccattggggatacagacagagataaggagtacgttaccattggggataccgagagataaggagtaggttaccattggggatacagacagagataaggagtaggttaccattggggatacagagagataaggagtaggttaccatttgggatacagagagataaggagtaggttaccattggggatacagacagagataaggagtaggttaccattggggatacagagagataaggagtaggttaccattggggatacagacagagataaggagtacgttaccattggggatacagtcagagataaggagtaggttaccattggggatacagacagagataaggagtaggttaccattggggatacagagagagataaggagtaggttgccattggggatacagacagagataaggagtaggttaccatttgggatacagacagagataaggagtaggttaccatttgggatacagagagataatgagtaggttaccattggggataaagacagagataaggagtaggttaccatttgggatacagagagataaggagtaggttaccattggggatacagacagagataaggagtacgttaccattggggatacagagagataaggagtaggttaccattggggatacagacagagataaggagtaggttaccattggggatacagagagataaggagtaggttaccattggggatacagacagagataaggagtaggttaccattggggatacagagataAGGAgc
>TU1952807
acagagagataaggagtaggttaccattggggatacagacagagataaggagtaggttaccatttgggatacagacagagataaggagtaggttaccatttgggatacagtcagagataaggagtaggttaccattggggatacagtcagagataaggagtaggttaccatttgggatacagacagagataaggagtaggttaccatttgggatacaaacagagataaggagtaggttaccatttgggatacagagagataaggagtaggttaccattggggatacagacagagataaggagtacgttaccattggggatacagagagataaggagtaggttaccattggggatacagacagagataaggagtaggttaccattggggatacagagagataaggagtaggttaccattggggatacagacagagataaggagtaggttaccattggggatacagagataAGGAgc
>TU1952803
aaaggagtaggttaccatttgggatacagacagagataaggagtaggttaccatttgggatacagagagataatgagtaggttaccattggggatacagacagagataaggagtaggttaccatttggggatacagacagagataaggagtaggttaccatttgggatacagacagagataaggagtaggttaccatttgggatacagacagagataaggagtaggttaccatttgggatacagacagagataaggagtaggttaccattggggatacagacagagacaaggagtaggttaccatttgggatacagacagagataaggagtaggttaccattggggatacagagagataaggagtaggttaccattggggatacagacagagataaggagtaggttaccatttgggatacagacagagataaggagcaggttaccatttgggatacagagagataaggagtaggttaccattggggatacagagagataaggagtaggttaccattggggatacagagagataaggagtaggttaccattggggatacagagagataaggagtaggttaccat

Function

NR:

description
chromatin modification-related protein eaf-1 isoform X4

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1952800 False 1190 lncRNA 0.43 4 8445975 8462422
TU1952801 False 759 lncRNA 0.42 3 8445975 8461635
TU1952805 False 664 lncRNA 0.42 2 8445975 8448120
TU1952798 False 1705 lncRNA 0.43 5 8447143 8459838
TU1952799 False 692 lncRNA 0.43 3 8447143 8462422
TU1952808 False 366 lncRNA 0.44 2 8447143 8453296
TU1952806 False 564 lncRNA 0.44 3 8448224 8459838
TU1952796 False 1225 lncRNA 0.43 2 8457456 8459838
TU1952807 False 475 lncRNA 0.43 2 8457456 8461635
TU1952803 True 583 lncRNA 0.43 3 8457868 8463535

Neighbor

gene id symbol gene type direction distance location
LOC118942993 NA coding downstream 257588 8187334 ~ 8188387 (-)
pthlha NA coding downstream 398959 8024974 ~ 8047016 (-)
LOC110515713 LOC106609844 coding downstream 442934 7945498 ~ 8003041 (-)
LOC110517214 LOC106599091 coding downstream 521235 7901712 ~ 7924740 (-)
LOC118942852 NA coding downstream 555702 7888911 ~ 7890273 (-)
LOC118942856 crbl2 coding upstream 342911 8805889 ~ 8808961 (-)
LOC118942860 NA coding upstream 473608 8937143 ~ 8938405 (-)
LOC118942862 NA coding upstream 527196 8990530 ~ 8991221 (-)
LOC118942861 NA coding upstream 621911 9085093 ~ 9090115 (-)
LOC118942864 NA coding upstream 638292 9100061 ~ 9104616 (-)
G1705096 NA non-coding downstream 113948 8331662 ~ 8332027 (-)
G1705075 NA non-coding downstream 159786 8285856 ~ 8286189 (-)
G1705063 NA non-coding downstream 198451 8247292 ~ 8247524 (-)
G1705062 NA non-coding downstream 207270 8237594 ~ 8238705 (-)
G1705032 NA non-coding downstream 280634 8165134 ~ 8165341 (-)
G1705362 NA non-coding upstream 3836 8467371 ~ 8469108 (-)
G1705365 NA non-coding upstream 12910 8476445 ~ 8490193 (-)
G1705383 NA non-coding upstream 57514 8521049 ~ 8521997 (-)
G1705416 NA non-coding upstream 147796 8611331 ~ 8612367 (-)
G1705422 LOC106595994 non-coding upstream 160853 8624388 ~ 8625848 (-)
G1704927 NA other downstream 483735 7941149 ~ 7962240 (-)
LOC118936572 LOC108250668 other downstream 677959 7585971 ~ 7768303 (-)
LOC118942848 LOC106594098 other downstream 1064516 7379889 ~ 7384439 (-)
G1705386 NA other upstream 68200 8531735 ~ 8532803 (-)
LOC118942865 LOC106593190 other upstream 811062 9261999 ~ 9277148 (-)
LOC110515809 LOC106592244 other upstream 1005088 9464081 ~ 9480516 (-)

Expression


Co-expression Network