G1705146


Basic Information

Item Value
gene id G1705146
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 8555773 ~ 8557530 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1952461
GggagaaacaacacacacacaacacacacacacacacactaacacacaataacacacaataccatgcaataccacacaataccatgcaataacacacaataccatgcaataacacacaataacacacaataacacacaataacacacaataacacgcaataacacacaataacacacaataacacacaataacacacaataacacacaataacacacacacacacaataacacacaataacacacaataacacacaataacacacaataccacacaataacacacacacacaataacacacaataccacacaataacacacaataccacacaataacacacaataacacacaataacacacaataccatgcaataacacacaataacacacaataacacacaataacacacaataacacacacacacaataacacacaataacacacaataccatgcaataacacacaataacacacaataacacacaataccacacaataccacacaataacacacaataccatgcaataacacacaataacacacaataccacacaataacacacaataacacacaataacacacaataccatgcaataacacacaataacacacaataacacacacacacaataacacacacacacaataacacacaataccatgCAATAACATACACACGGTGGAACTTTCAAGCAGAAGGATTGTTGGTCGTGATACTTGGTATTGGTAGAGGAGAGACAACACGGTGGAACTATCAAACAGAAGGATTGTTAGTCGTGATACTTGGTATTGGTAGAGGAGAGACAACACGGTGGAA
>TU1952462
Gggagaaacaacacacacacaacacacacacacacacactaacacacaataacacacaataccatgcaataccacacaataccatgcaataacacacaataccatgcaataacacacaataacacacaataacacacaataacacacaataacacgcaataacacacaataacacacaataacacacaataacacacaataacacacaataacacacaataccacacaataacacac
>TU1952460
caataacacacaataccatgcaataacacacaataacacacaataacacacaataccacacaataacacacaataacacacaataacacacaataccacacaataacacacaataacacacaataccacacaataacacacacacacaataacacacaataacacacaataacacacaataccatgcaataacacacaataacacacaataacacacaataccacacaataacacacacacacaataacacacaataacacacaataacacacaataacacacaataacacacacacacaataacacacaataacacacaataccatgcaataacacacaataacacacaataacacacaataccacacaataccacacaataacacacaataccatgcaataacacacaataacacacaataccacacaataacacacaataacacacaataacacacaataccatgcaataacacacaataacacacaataacacacacacacaataacacacacacacaataacacacaataccatgCAATAACATACACACGGTGGAACTTTCAAGCAGAAGGATTGTTGGTCGTGATACTTGGTATTGGTAGAGGAGAGACAACACGGTGGAACTATCAAACAGAAGGATTGTTAGTCGTGATACTTGGTATTGGTAGAGGAGAGACAACACGGTGGAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1952461 False 822 lncRNA 0.36 4 8555773 8557530
TU1952462 False 237 lncRNA 0.36 2 8555773 8556099
TU1952460 True 694 lncRNA 0.36 2 8556531 8557530

Neighbor

gene id symbol gene type direction distance location
LOC118942854 NA coding upstream 22963 8524956 ~ 8532810 (+)
LOC118942992 NA coding upstream 422935 8128485 ~ 8132838 (+)
LOC118942853 LOC106593275 coding upstream 546305 8003415 ~ 8009468 (+)
LOC118943012 NA coding upstream 551348 8004291 ~ 8004425 (+)
yt6j yt6j coding upstream 612189 7925016 ~ 7943584 (+)
LOC110512606 lrp6 coding downstream 11860 8569390 ~ 8669398 (+)
LOC118936349 tbk1 coding downstream 127389 8684919 ~ 8744666 (+)
LOC118942855 gpr19 coding downstream 213357 8770887 ~ 8791070 (+)
LOC118942857 dusp16 coding downstream 262079 8819609 ~ 8898371 (+)
LOC118942858 LOC106612417 coding downstream 306801 8864331 ~ 8869236 (+)
G1705142 NA non-coding upstream 8644 8545714 ~ 8547129 (+)
G1705129 NA non-coding upstream 40588 8514577 ~ 8515185 (+)
G1705126 NA non-coding upstream 49344 8505246 ~ 8506429 (+)
G1705125 NA non-coding upstream 50834 8504179 ~ 8504939 (+)
G1705121 NA non-coding upstream 73639 8479641 ~ 8482134 (+)
LOC118942994 LOC106591951 non-coding downstream 4044 8538928 ~ 8564807 (+)
G1705171 NA non-coding downstream 59075 8616605 ~ 8616891 (+)
G1705177 NA non-coding downstream 118035 8675565 ~ 8675864 (+)
G1705181 NA non-coding downstream 129496 8687026 ~ 8687455 (+)
G1705184 NA non-coding downstream 139324 8696854 ~ 8700184 (+)
G1704651 NA other upstream 705653 7849560 ~ 7850120 (+)
G1704562 NA other upstream 897904 7657429 ~ 7657869 (+)
LOC118942849 arhgap8 other upstream 1009929 7527527 ~ 7561975 (+)
G1704409 NA other upstream 1405780 7149400 ~ 7149993 (+)
G1704232 NA other upstream 1548033 7007169 ~ 7007740 (+)
G1705229 NA other downstream 292868 8850398 ~ 8851107 (+)
eps8a LOC106594571 other downstream 350986 8908286 ~ 9091490 (+)
G1705267 NA other downstream 417774 8975304 ~ 8976565 (+)
G1705279 NA other downstream 454396 9011926 ~ 9013163 (+)
G1705918 NA other downstream 1097768 9655298 ~ 9655718 (+)

Expression


Co-expression Network