G1705485


Basic Information

Item Value
gene id G1705485
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 8793641 ~ 8794263 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1953013
TCACATCTGATGCTTTATTCATTAGGTATTCATCAGTAGAAAGCAATGAGTATTTAAATcacagtacagacagtagtttCACACACTAACAGAGACTAACAGAGTGTCTGGCAGGTTAGAGGCTGGGTTTagtgtcaggggttagaggtcagaggttaggggtcagaggttaggggtcagaggttaggggtcagaggttaggggtcagggtctgGCAGTGACAGGTGAGAGCAGTCAAGGCCAGTGATGGTGCAGAGCGTTTCAATGAGACTTCTTCATCGCcagaggttaggggtcagaggttaggggtgAGACTCCTTCATCGCCAACCAATCAGGTCCTCGGTCTGTTGCGTCCATCTGCGTGTGGCTCAGGGGAGCCGGGGGAGCCACCAAAGACTGTCCAGTTAAAGGCCGTTTGTCAGACCAAACACCTCAACGCTTCAGCCTCCATGAAAACCACAGGGATCACAACAAAACAGCAATAACAACATCACGTGTGTTATAACAGATGGTACAATGTGTTATAACAGATGGTACAATGCGTTATAACAGATGGTACAATGCGTTATAACAGATGGTACAATGC
>TU1953014
TCACATCTGATGCTTTATTCATTAGGTATTCATCAGTAGAAAGCAATGAGTATTTAAATcacagtacagacagtagtttCACACACTAACAGAGACTAACAGAGTGTCTGGCAGGTTAGAGGCTGGGTTTagtgtcaggggttagaggtcagaggttaggggtcagaggttaggggtcagaggttaggggtcagaggttaggggtcagaggttaggggtcagggtctgGCAGTGACAGGTGAGAGCAGTCAAGGCCAGTGATGGTGCAGAGCGTTTCAATGAGACTTCTTCATCGCcagaggttaggggtcagaggttaggggtgAGACTCCTTCATCGCCAACCAATCAGGTCCTCGGTCTGTTGCGTCCATCTGCGTGTGGCTCAGGGGAGCCGGGGGAGCCACCAAAGACTGTCCAGTTAAAGGCCGTTTGTCAGACCAAACACCTCAACGCTTCAGCCTCCATGAAAACCACAGGGATCACAACAAAACAGCAATAACAACATCACGTGTGTTATAACAGATGGTACAATGTGTTATAACAGATGGTACAATGCGTTATAACAGATGGTACAATGCGTTATAACAGATGGTACAATGC

Function

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU1953013 False 588 lncRNA 0.48 2 8793641 8794263
TU1953014 True 602 lncRNA 0.48 2 8793641 8794263

Neighbor

gene id symbol gene type direction distance location
LOC118942993 NA coding downstream 605254 8187334 ~ 8188387 (-)
pthlha NA coding downstream 746625 8024974 ~ 8047016 (-)
LOC110515713 LOC106609844 coding downstream 790600 7945498 ~ 8003041 (-)
LOC110517214 LOC106599091 coding downstream 868901 7901712 ~ 7924740 (-)
LOC118942852 NA coding downstream 903368 7888911 ~ 7890273 (-)
LOC118942856 crbl2 coding upstream 12183 8805889 ~ 8808961 (-)
LOC118942860 NA coding upstream 142880 8937143 ~ 8938405 (-)
LOC118942862 NA coding upstream 196468 8990530 ~ 8991221 (-)
LOC118942861 NA coding upstream 291183 9085093 ~ 9090115 (-)
LOC118942864 NA coding upstream 307564 9100061 ~ 9104616 (-)
G1705484 gpr19 non-coding downstream 509 8789626 ~ 8793132 (-)
G1705468 NA non-coding downstream 72730 8712517 ~ 8720911 (-)
G1705454 NA non-coding downstream 93650 8697137 ~ 8699991 (-)
G1705422 LOC106595994 non-coding downstream 167793 8624388 ~ 8625848 (-)
G1705416 NA non-coding downstream 181274 8611331 ~ 8612367 (-)
G1705491 NA non-coding upstream 58572 8852835 ~ 8854728 (-)
G1705504 NA non-coding upstream 64837 8859100 ~ 8861698 (-)
G1705513 NA non-coding upstream 91321 8885584 ~ 8888167 (-)
G1705530 NA non-coding upstream 144373 8938636 ~ 8938899 (-)
G1705386 NA other downstream 260838 8531735 ~ 8532803 (-)
G1704927 NA other downstream 831401 7941149 ~ 7962240 (-)
LOC118936572 LOC108250668 other downstream 1025625 7585971 ~ 7768303 (-)
LOC118942865 LOC106593190 other upstream 480334 9261999 ~ 9277148 (-)
LOC110515809 LOC106592244 other upstream 674360 9464081 ~ 9480516 (-)
G1705975 NA other upstream 847687 9641950 ~ 9642941 (-)

Expression


Co-expression Network