G1705263


Basic Information

Item Value
gene id G1705263
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 8964012 ~ 8972856 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1952665
tacagggagaggaacacagaacagacagtaagatacatagtaactgtgtgttcagggagaggaacacagaacagacagtaagatacatagtaactgtctgttcagggagaggaacacagaacagacagtaagatacatagtaactgtctgttcagggagaggtaagatacatagtaactgtgtgTGATGTTCCATTatacagggagaggaacacagaacagacagtaagatacataataactgtctgttcagggagaggaacacagaacagacagtaagatacatagtaactgtctgttcagggagaggaacacagaacagacagtaagatacatagtaactgtctgttcagggagaggaacacagaacagacagtaagatacatagtaactgtctgttcagggagaggaacacagaacagacagtaagatacatagtaactgtgtgTAATGTTCCATTatacagggagaggaacacagaacagacagtaagatacataataactgtctgttcagggagaggaacacagaacagacagtaagatacatagtaactgtgtgTGATGTTCCATTatacagggagaggaacacagaacagacagtaagatacataataactgtctgttcagggagaggaacacagaacagacagtaagatacatagtaactgtctgttcagggagaggaacacagaacagacagtaagatacatagtaactgtctgttcagggagaggaacacagaacagacagtaagatacatagtaactgtctgttcagggagaggaacacagaacagacagtaagatacatagtaactgtgtgTAATGTTCCATTatacagggagaggaacacagaacagacagtaagatacatagtaactgtttgttcagggagaggaacacagaacagacagtaagatacatagtaactgtctgttcagggagaggtaagatacatagtaactgtctgttcagggagaggaacacagaacagacagtaagat
>TU1952669
tacagggagaggaacacagaacagacagtaagatacatagtaactgtctgttcagggagaggaacacagaacagacagtaagatacatagtaactgtctgtacagggagaggagcacagaacagacagtaagatacatagtaactgtctgttcagggagaggaacacagaacagacagtaagatacatagtaactgtgtgTAATGTTCCATTatacagggagaggaacacagaacagacagtaagatacatagtaactgtctgttcagggagaggaacacagaacagacagtaagatacatagtaactgtctgtacagggagaggagcacagaacagacagtaagatacatagtaactgtctgttcagggagaggaacacagaacagacagtaagatacatagtaac
>TU1952670
tacagggagaggaacacagaacagacagtaagatacatagtaactgtctgttcagggagaggaacacagaacagacagtaagatacatagtaactgtctgtacagggagaggagcacagaacagacagtaagatacatagtaactgtctgttcagggagaggaacacagaacagacagtaagatacatagtaactgtgtgTAATGTTCCATTatacagggagaggaacacagaacagacagtaagatacatagtaactgtctgttcagggagaggaacacagaacagacagtaagatacatagtaactgt
>TU1952671
tacagggagaggaacacagaacagacagtaagatacatagtaactgtctgttcagggagaggaacacagaacagacagtaagatacatagtaactgtctgtacagggagaggagcacagaacagacagtaagatacatagtaactgtctgttcagggagaggaacacagaacagacagtaagatacatagtaactgtgtgTAATGTTCCATTatacagggagaggaacacagaacagacagtaagatacatagtaactgtgtgttcagggagaggaacacagaacagacagtaagatacatagtaactgtctgttcagggagaggaacacagaacagacaataagatacatagtaactgtctgttcagggagaggaacacagaacagacagtaagatacatagtaactgtgtgttcagggagaggaacacagaacagacagtaagatacatagtaactgtgtgttcagggagaggaacacagaacagacagtaagatacatagtaactgtctgttcagggagaggaacacagaacagacagtaagatacatagtaactgtgtgttcagggagaggaacacagaacagacagtaagata
>TU1952673
tacagggagaggaacacagaacagacagtaagatacatagtaactgtctgttcagggagaggaacacagaacagacagtaagatacatagtaactgtctgtacagggagaggagcacagaacagacagtaagatacatagtaactgtctgttcagggagaggaacacagaacagacagtaagatacatagtaactgtgtgTAATGTTCCATTatacagggagaggaacacagaacagacagtaagatacatagtaactgtgtgTAATGTTCCATTatacagggagaggaacacagaacagacagtaagatacatagtaactgtttgttcagggagaggaacacagaacagacagtaagatacatagtaactgtctgttcagggagaggtaagatacatagtaactgtctgttcagggagaggaacacagaacagacagtaagat
>TU1952675
tacagggagaggaacacagaacagacagtaagatacatagtaactgtctgttcagggagaggaacacagaacagacagtaagatacatagtaactgtctgtacagggagaggagcacagaacagacagtaagatacatagtaactgtctgttcagggagaggaacacagaacagacagtaagatacatagtaactgtgtgTAATGTTCCATTatacagggagaggaacacagaacagacagtaagatacatagtaactgtgtgTAATGTTCCATTatacagggagaggaacacagaacagacagtaagatacatagtaactgtctgttcagggagaggaacacagaacagacagtaagatacatagtaactgtctgtacagggagaggagcacagaacagacagtaagatacatagtaactgtctgttcagggagaggaacacagaacagacagtaagatacatagtaac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1952665 False 1004 lncRNA 0.41 3 8964012 8971470
TU1952669 False 407 lncRNA 0.42 3 8966148 8968201
TU1952670 False 310 lncRNA 0.41 3 8966148 8968973
TU1952671 False 598 lncRNA 0.42 3 8966148 8972856
TU1952673 False 444 lncRNA 0.41 3 8966148 8971470
TU1952675 True 470 lncRNA 0.41 4 8966148 8971830

Neighbor

gene id symbol gene type direction distance location
LOC118942857 dusp16 coding upstream 65641 8819609 ~ 8898371 (+)
LOC118942858 LOC106612417 coding upstream 94776 8864331 ~ 8869236 (+)
LOC118942855 gpr19 coding upstream 172942 8770887 ~ 8791070 (+)
LOC118936349 tbk1 coding upstream 219547 8684919 ~ 8744666 (+)
LOC110512606 lrp6 coding upstream 294614 8569390 ~ 8669398 (+)
LOC118942863 NA coding downstream 51518 9024374 ~ 9027016 (+)
LOC118942859 NA coding downstream 109940 9082796 ~ 9084558 (+)
zgc:194209 LOC106591857 coding downstream 244369 9217225 ~ 9241339 (+)
LOC110507941 LOC106592244 coding downstream 364025 9336881 ~ 9354472 (+)
LOC118943004 LOC106591072 coding downstream 414861 9387717 ~ 9391585 (+)
G1705248 NA non-coding upstream 52631 8909992 ~ 8911381 (+)
G1705214 NA non-coding upstream 90752 8872765 ~ 8873260 (+)
G1705227 NA non-coding upstream 117948 8845515 ~ 8846064 (+)
G1705216 NA non-coding upstream 156066 8803063 ~ 8807946 (+)
G1705217 NA non-coding upstream 166736 8796928 ~ 8797276 (+)
G1705266 NA non-coding downstream 876 8973732 ~ 8974086 (+)
G1705274 NA non-coding downstream 22184 8995040 ~ 8996718 (+)
G1705275 NA non-coding downstream 26599 8999455 ~ 9000860 (+)
G1705278 NA non-coding downstream 36068 9008924 ~ 9009347 (+)
G1705288 NA non-coding downstream 63334 9036190 ~ 9036407 (+)
G1705229 NA other upstream 112905 8850398 ~ 8851107 (+)
LOC118942994 LOC106591951 other upstream 402800 8538928 ~ 8564807 (+)
G1704651 NA other upstream 1113892 7849560 ~ 7850120 (+)
G1704562 NA other upstream 1306143 7657429 ~ 7657869 (+)
LOC118942849 arhgap8 other upstream 1418168 7527527 ~ 7561975 (+)
G1705267 NA other downstream 2448 8975304 ~ 8976565 (+)
G1705279 NA other downstream 39070 9011926 ~ 9013163 (+)
G1705918 NA other downstream 682442 9655298 ~ 9655718 (+)
G1705920 NA other downstream 686475 9659331 ~ 9660140 (+)
G1706013 NA other downstream 775329 9748185 ~ 9753473 (+)

Expression


Co-expression Network