G1705309


Basic Information

Item Value
gene id G1705309
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 9102434 ~ 9106488 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1952735
agaaacagagttgTTCCAGAATGAgtacatggagaaacagagttgTTCCAGAATGAgtacatggagaaacagagtaGTTCCAGAATGAgtacatggagaaacagagttgTTCCAGAATGAgtacatggagaaacagagttgTTCCAGAATGAgtacatggagaaacagagttgTTCTAGAATGAGTGGGTGgtacatggagaaacagagttgTTCCAGAATGAgtacatggagaaacagagttgTTCCAGAATGAgtacatggagaaacagagttgTTCCAGAATGAgtacatggagaaacagagttgTTCCAGAATGAGTGTGTTGTACATGGAGAAACAGCGTTGTTCCAGAATGAgtacatggagaaacagagttgTTCCAGAATGAgtacatggagaaacagagttgTTCCAGAATGAGTGTGTTgtacatggagaaacagagttgTTCCAGAATGAGTGTGTTGTACATGGAGAAACAGCGTAGTTCCAGAATGAGTGTGTTgtacatggagaaacagagttgTTCCAGAATGAGTGTGTTgtacatggagaaacagagtaGTTCCAGAATGAGTACATGGAGAAACAGCGTAGTTCCTGAATGAGTGTGTTgtacATGGAGAAACAGCGTAGTTCCTGAATGAGTGTGTTgtacatggagaaacagagtaGTTCCAGAATGAGTACATGGAGAAACAGCGTAGTTCCTGAATGAgtacatggagaaacagagttgTTCCAGAATGAGTGTGTTgtacatggagaaacagagttgTTCCTGAATGAGTGTGTTGTACATGGAGAAACAGCGTAGTTCCAGAATGAgtacatggagaaacagagttgTTCCAGAATGAgtacatggagaaacagagttgTTCCTGAATGAGTGTGTTGTACATGGAGAAACAGCGTAGTTCCTGAATGAgtacatggagaaacagagttgTTCCAGAATGAGTGTGTTGTACATGGAGAAACAGCGTTGTTCCAGAATGAgtacatggagaaacagagttgTTCCAGAATGAgtacatggagaaacagagttgTTCCAGAATGAGTGTGTTGTACATGGAGAAACAGCGTAGTTCCTGAATGAGTGTGTTgtacatggagaaacagagttgTTCCTGAATGAGTGTGTTGTACATGGAGAAACAGCGTAGTTCCAGAATGAgtacatggagaaacagagttgTTCCAGAATGAgtacatggagaaacagagttgTTCCTGAATGAGTGTGTTGTACATGGAGAAACAGCGTAGTTCCTGAATGAgtacatggagaaacagagttgTTCCAGAATGAGTGTGTTGTACATGGAGAAACAGCGTTGTTCCAGAATGAgtacatggagaaacagagttgTTCCAGAATGAgtacatggagaaacagagttgTTCCAGAATGAGTGTGTTGTACATGGAGAAACAGCGTAGTTCCTGAATGAGTGTGTTgtacatggagaaacagagttgTTCCTGAATGAgtacatggagaaacagagttgTTCCTGAATGAGTGTGTTGTACATGGAGAAACAGCGTAGTTCCTGAATGAGTACATGGAGAAACAGCGTAGTTCCTGTCATCaggaatatatatacagtgtgtcagaTGGAGAACTGCGTTAATAGAAGCCCTGTCATGTAACTAGTGATGCACATTTCTGATAACTTTCACAAAAGTCACagcttttccagaaatcctgtttgGAGGATTTCCAGATTTCCTTCTAATTACCTCCTGATTCCGGGAATCTTCCAACTTTTGGAACTCTAAACCCATGTAATTTAACCTATGTAATGTAAGGTCAATATGAGTTCAGGGTGGTTGACCCTTCACCTCTGTAAACACTTGGTGCTCCTCTAACTAAGGAGTGGTCAGACAGACggctggacagagacagatgagctggagacggacagatggacagagacagatgagctGGAGACGGACatatggacagagacagatgagctggacagagacagatgagctggagacggacagatggacagagacagatgagatggacagagacagatgagctggacagagacagatgagatggacagagacagatgagctggacagagacagatgagctGGACGGAGACAGATGagctggacagagacagatgagctGGAGACGGACatatggacagagacagatgagctggacagagacagatgagctggagacggacagatggacagagacagatgagaTGGATAGAGACAGATGAGCTGGACGGAGACAGATGAGCTGGACGGAGACAGAtgagatggacagagacagatgagctGGACGGAGACAGATGAGCTGGACGGAGACAGATGAGCTGGAGACGGAAGGCCAGTACAGTAGCCCTAACTCTTAACTCAGTAGCTGCTGCACCAACAATCAAGATCATGTAATGATCCCTTTTTTAGTAAACACTCAACTGTTCGATAATGTACCTCAATAATAATGTACCTTGATAATGCTGAGCCAGAGTgaggatttgatttgatatttgtcCAGTTATTCCATTTCCTTACTGTCCAGAGGTCCCATATAGATGGAGGTAAACTGGTCTTCACACCCTAGTGGAGGACCCCTCTCCCTGTGACATCAGAACTGTGCTGTCTGTAGGTCTGATGTCATCACCAGGAGACACAGGAAGTGCCTAATCTGATATGCACATTTACAACATGCACCGTTCAGGTCTCAACACTCGATTGCAACTAATGCAATTATATACCCTGGTAAACAAATGACAGTTTAAAACCTCCCCATCTTGTTGTTTCAGTAAAGAGGTTTCAATGACAGTTAAAAACCTCCCCATCTTCTAGAAAACATCCCTCTTGTTGTTTCAGTAAAGAGGTTTAAATGACAGTTTAAAACCTCCCCATCTTCAAGAAGACATCCCTCTTGTTTCAGTAAAGAGGTTTAAATGACAGTTAAAACCTCCCCATCGTGTTGTTTCAGTAAAAAGGTTTAAATGACAGTTAAAAACCTCCC
>TU1952737
agaaacagagttgTTCCAGAATGAgtacatggagaaacagagttgTTCCAGAATGAgtacatggagaaacagagtaGTTCCAGAATGAgtacatggagaaacagagttgTTCCAGAATGAgtacatggagaaacagagttgTTCCAGAATGAgtacatggagaaacagagttgTTCTAGAATGAGTGGGTGgtacatggagaaacagagttgTTCCAGAATGAgtacatggagaaacagagttgTTCCAGAATGAgtacatggagaaacagagttgTTCCAGAATGAgtacatggagaaacagagttgTTCCAGAATGAGTGTGTTGTACATGGAGAAACAGCGTTGTTCCAGAATGAgtacatggagaaacagagttgTTCCAGAATGAgtacatggagaaacagagttgTTCCAGAATGAGTGTGTTgtacatggagaaacagagttgTTCCAGAATGAGTGTGTTGTACATGGAGAAACAGCGTAGTTCCTGTCATCaggaatatatatacagtgtgtcagaTGGAGAACTGCGTTAATAGAAGCCCTGTCATGTAACTAGTGATGCACATTTCTGATAACTTTCACAAAAGTCACagcttttccagaaatcctgtttgGAGGATTTCCAGATTTCCTTCTAATTACCTCCTGATTCCGGGAATCTTCCAACTTTTGGAACTCTAAA
>TU1952738
agaaacagagttgTTCCAGAATGAgtacatggagaaacagagttgTTCCAGAATGAgtacatggagaaacagagtaGTTCCAGAATGAgtacatggagaaacagagttgTTCCAGAATGAgtacatggagaaacagagttgTTCCAGAATGAgtacatggagaaacagagttgTTCTAGAATGAGTGGGTGgtacatggagaaacagagttgTTCCAGAATGAgtacatggagaaacagagttgTTCCAGAATGAgtacatggagaaacagagttgTTCCAGAATGAgtacatggagaaacagagttgTTCCAGAATGAGTGTGTTGTACATGGAGAAACAGCGTTGTTCCAGAATGAgtacatggagaaacagagttgTTCCAGAATGAgtacatggagaaacagagttgTTCCAGAATGAGTGTGTTgtacatggagaaacagagttgTTCCAGAATGAGTGTGTTGTACATGGAGAAACAGCGTAGTTCCAGAATGAGTGTGTTgtacatggagaaacagagttgTTCCAGAATGAGTACATGGAGAAACAGCGTAGTTCCAGAATGAgtacatggagaaacagagttgTTCCAGAATGAgtacatggagaaacagagttgTTCCTGAATGAGTGTGTTGTACATGGAGAAACAGCGTAGTTCCTGAATGAgtacatggagaaacagagttgTTCCAGAATGAGTGTGTTGTACATGGAGAAACAGCGTTGTTCCAGAATGAgtacatggagaaacagagttgTTCCAGAATGAgtacatggagaaacagagttgTTCCAGAATGAGTGTGTTGTACATGGAGAAACAGCGTAGTTCCTGAATGAGTGTGTTgtacatggagaaacagagttgTTCCTGAATGAgtacatggagaaacagagttgTTCCTGAATGAGTGTGTTGTACATGGAGAAACAGCGTAGTTCCTGAATGAGTACATGGAGAAACAGCGTAGTTCCTGTCATCaggaatatatatacagtgtgtcagaTGGAGAACTGCGTTAATAGAAGCCCTGTCATGTAACTAGTGATGCACATTTCTGATAACTTTCACAAAAGTCACagcttttccagaaatcctgtttgGAGGATTTCCAGATTTCCTTCTAATTACCTCCTGATTCCGGGAATCTTCCAACTTTTGGAACTCTAAACCCATGTAATTTAACCTATGTAATGTAAGGTCAATATGAGTTCAGGGTGGTTGACCCTTCACCTCTGTAAACACTTGGTGCTCCTCTAACTAAGGAGTGGTCAGACAGACggctggacagagacagatgagctggagacggacagatggacagagacagatgagctGGAGACGGACatatggacagagacagatgagctggacagagacagatgagctggagacggacagatggacagagacagatgagatggacagagacagatgagctggacagagacagatgagatggacagagacagatgagctggacagagacagatgagctGGACGGAGACAGATGagctggacagagacagatgagctGGAGACGGACatatggacagagacagatgagctggacagagacagatgagctggagacggacagatggacagagacagatgagaTGGATAGAGACAGATGAGCTGGACGGAGACAGATGAGCTGGACGGAGACAGAtgagatggacagagacagatgagctGGACGGAGACAGATGAGCTGGACGGAGACAGATGAGCTGGAGACGGAAGGCCAGTACAGTAGCCCTAACTCTTAACTCAGTAGCTGCTGCACCAACAATCAAGATCATGTAATGATCCCTTTTTTAGTAAACACTCAACTGTTCGATAATGTACCTCAATAATAATGTACCTTGATAATGCTGAGCCAGAGTgaggatttgatttgatatttgtcCAGTTATTCCATTTCCTTACTGTCCAGAGGTCCCATATAGATGGAGGTAAACTGGTCTTCACACCCTAGTGGAGGACCCCTCTCCCTGTGACATCAGAACTGTGCTGTCTGTAGGTCTGATGTCATCACCAGGAGACACAGGAAGTGCCTAATCTGATATGCACATTTACAACATGCACCGTTCAGGTCTCAACACTCGATTGCAACTAATGCAATTATATACCCTGGTAAACAAATGACAGTTTAAAACCTCCCCATCTTGTTGTTTCAGTAAAGAGGTTTCAATGACAGTTAAAAACCTCCCCATCTTCTAGAAAACATCCCTCTTGTTGTTTCAGTAAAGAGGTTTAAATGACAGTTTAAAACCTCCCCATCTTCAAGAAGACATCCCTCTTGTTTCAGTAAAGAGGTTTAAATGACAGTTAAAACCTCCCCATCGTGTTGTTTCAGTAAAAAGGTTTAAATGACAGTTAAAAACCTCCC
>TU1952739
agaaacagagttgTTCCAGAATGAgtacatggagaaacagagttgTTCCAGAATGAgtacatggagaaacagagtaGTTCCAGAATGAgtacatggagaaacagagttgTTCCAGAATGAgtacatggagaaacagagttgTTCCAGAATGAgtacatggagaaacagagttgTTCTAGAATGAGTGGGTGgtacatggagaaacagagttgTTCCAGAATGAgtacatggagaaacagagttgTTCCAGAATGAgtacatggagaaacagagttgTTCCAGAATGAgtacatggagaaacagagttgTTCCAGAATGAGTGTGTTGTACATGGAGAAACAGCGTTGTTCCAGAATGAgtacatggagaaacagagttgTTCCAGAATGAgtacatggagaaacagagttgTTCCAGAATGAGTGTGTTgtacatggagaaacagagttgTTCCAGAATGAGTGTGTTGTACATGGAGAAACAGCGTAGTTCCAGAATGAGTGTGTTgtacATGGAGAAACAGCGTAGTTCCTGAATGAGTGTGTTgtacatggagaaacagagtaGTTCCAGAATGAGTACATGGAGAAACAGCGTAGTTCCTGAATGAgtacatggagaaacagagttgTTCCAGAATGAGTGTGTTgtacatggagaaacagagttgTTCCTGAATGAGTGTGTTGTACATGGAGAAACAGCGTAGTTCCAGAATGAgtacatggagaaacagagttgTTCCAGAATGAgtacatggagaaacagagttgTTCCTGAATGAGTGTGTTGTACATGGAGAAACAGCGTAGTTCCTGAATGAgtacatggagaaacagagttgTTCCAGAATGAGTGTGTTGTACATGGAGAAACAGCGTTGTTCCAGAATGAgtacatggagaaacagagttgTTCCAGAATGAgtacatggagaaacagagttgTTCCAGAATGAGTGTGTTGTACATGGAGAAACAGCGTAGTTCCTGAATGAGTGTGTTgtacatggagaaacagagttgTTCCTGAATGAGTGTGTTGTACATGGAGAAACAGCGTAGTTCCAGAATGAgtacatggagaaacagagttgTTCCAGAATGAgtacatggagaaacagagttgTTCCTGAATGAGTGTGTTGTACATGGAGAAACAGCGTAGTTCCTGAATGAgtacatggagaaacagagttgTTCCAGAATGAGTGTGTTGTACATGGAGAAACAGCGTTGTTCCAGAATGAgtacatggagaaacagagttgTTCCAGAATGAgtacatggagaaacagagttgTTCCAGAATGAGTGTGTTGTACATGGAGAAACAGCGTAGTTCCTGAATGAGTGTGTTgtacatggagaaacagagttgTTCCTGAATGAgtacatggagaaacagagttgTTCCTGAATGAGTGTGTTGTACATGGAGAAACAGCGTAGTTCCTGAATGAGTACATGGAGAAACAGCGTAGTTCCTGTCATCaggaatatatatacagtgtgtcagaTGGAGAACTGCGTTAATAGAAGCCCTGTCATGTAACTAGTGATGCACATTTCTGATAACTTTCACAAAAGTCACagcttttccagaaatcctgtttgGAGGATTTCCAGATTTCCTTCTAATTACCTCCTGATTCCGGGAATCTTCCAACTTTTGGAACTCTAAACCCATGTAATTTAACCTATGTAATGTAAGGTCAATATGAGTTCAGGGTGGTTGACCCTTCACCTCTGTAAACACTTGGTGCTCCTCTAACTAAGGAGTGGTCAGACAGACggctggacagagacagatgagctggagacggacagatggacagagacagatgagctGGAGACGGACatatggacagagacagatgagctggacagagacagatgagctggagacggacagatggacagagacagatgagatggacagagacagatgagctggacagagacagatgagatggacagagacagatgagctggacagagacagatgagctGGACGGAGACAGATGagctggacagagacagatgagctGGAGACGGACatatggacagagacagatgagctggacagagacagatgagctggagacggacagatggacagagacagatgagaTGGATAGAGACAGATGAGCTGGACGGAGACAGATGAGCTGGACGGAGACAGAtgagatggacagagacagatgagctGGACGGAGACAGATGAGCTGGACGGAGACAGATGAGCTGGAGACGGAAGGCCAGTACAGTAGCCCTAACTCTTAACTCAGTAGCTGCTGCACCAACAATCAAGATCATGTAATGATCCCTTTTTTAGTAAACACTCAACTGTTCGATAATGTACCTCAATAATAATGTACCTTGATAATGCTGAGCCAGAGTgaggatttgatttgatatttgtcCAGTTATTCCATTTCCTTACTGTCCAGAGGTCCCATATAGATGGAGGTAAACTGGTCTTCACACCCTAGTGGAGGACCCCTCTCCCTGTGACATCAGAACTGTGCTGTCTGTAGGTCTGATGTCATCACCAGGAGACACAGGAAGTGCCTAATCTGATATGCACATTTACAACATGCACCGTTCAGGTCTCAACACTCGATTGCAACTAATGCAATTATATACCCTGGTAAACAAATGACAGTTTAAAACCTCCCCATCTTGTTGTTTCAGTAAAGAGGTTTCAATGACAGTTAAAAACCTCCCCATCTTCTAGAAAACATCCCTCTTGTTGTTTCAGTAAAGAGGTTTAAATGACAGTTTAAAACCTCCCCATCTTCAAGAAGACATCCCTCTTGTTTCAGTAAAGAGGTTTAAATGACAGTTAAAACCTCCCCATCGTGTTGTTTCAGTAAAAAGGTTTAAATGACAGTTAAAAACCTCCC

Function

NR:

description
PREDICTED: bifunctional endo-1,4-beta-xylanase XylA-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1952735 False 3018 lncRNA 0.43 4 9102434 9106488
TU1952737 False 690 lncRNA 0.41 2 9102434 9104387
TU1952738 False 2404 lncRNA 0.43 4 9102434 9106488
TU1952739 True 2908 lncRNA 0.43 4 9102434 9106488

Neighbor

gene id symbol gene type direction distance location
eps8a LOC106594571 coding upstream 10944 8908286 ~ 9091490 (+)
LOC118942859 NA coding upstream 17876 9082796 ~ 9084558 (+)
LOC118942863 NA coding upstream 75418 9024374 ~ 9027016 (+)
LOC118942857 dusp16 coding upstream 204063 8819609 ~ 8898371 (+)
LOC118942858 LOC106612417 coding upstream 233198 8864331 ~ 8869236 (+)
zgc:194209 LOC106591857 coding downstream 110737 9217225 ~ 9241339 (+)
LOC110507941 LOC106592244 coding downstream 230393 9336881 ~ 9354472 (+)
LOC118943004 LOC106591072 coding downstream 281229 9387717 ~ 9391585 (+)
LOC118936575 LOC106592244 coding downstream 296006 9402494 ~ 9413171 (+)
LOC118942866 LOC106576670 coding downstream 425616 9532104 ~ 9722986 (+)
G1705305 NA non-coding upstream 6828 9095396 ~ 9095606 (+)
G1705304 NA non-coding upstream 7348 9094713 ~ 9095086 (+)
G1705297 NA non-coding upstream 50141 9051392 ~ 9052293 (+)
G1705296 NA non-coding upstream 54306 9047867 ~ 9048128 (+)
G1705323 NA non-coding downstream 45682 9152170 ~ 9153074 (+)
G1705340 NA non-coding downstream 94882 9201370 ~ 9202495 (+)
G1705659 NA non-coding downstream 120149 9226637 ~ 9226973 (+)
G1705660 NA non-coding downstream 123206 9229694 ~ 9231753 (+)
G1705665 NA non-coding downstream 137271 9243759 ~ 9244263 (+)
G1705279 NA other upstream 89271 9011926 ~ 9013163 (+)
G1705267 NA other upstream 125869 8975304 ~ 8976565 (+)
G1705229 NA other upstream 251327 8850398 ~ 8851107 (+)
LOC118942994 LOC106591951 other upstream 541222 8538928 ~ 8564807 (+)
G1705918 NA other downstream 548810 9655298 ~ 9655718 (+)
G1705920 NA other downstream 552843 9659331 ~ 9660140 (+)
G1706013 NA other downstream 641697 9748185 ~ 9753473 (+)
G1706090 NA other downstream 809225 9915713 ~ 9918019 (+)
G1706152 NA other downstream 1027900 10134388 ~ 10135384 (+)

Expression


Co-expression Network