G1705671 (gns)


Basic Information

Item Value
gene id G1705671
gene name gns
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 9274554 ~ 9275993 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1953280
CTGGTTGAGGTACTTCCCAGCGAAGAAGGTCTGGTAGCCAGCATAGGCCTGCAGTAGAGCAGGGAAGGTCTTGGGCTCCTGGGTCTTCTGCCAGGCCGTGCTGCTGCAGTTCCCCTCCAGAGTGTTGTTGATCACATGGTGGTTATGAGGATACTTTCCTGTTAGGATGCTGGCTCTGCTGGGACAGCACAGTGGGCTGGCTACAAACTGggataaacacaacaacatactCCCATCAGCATGTCTCCTGGTGCAGTGACACTACACTCATTCATCTCCCATCCTGCCCCTGAAACCCTCATCATGCATTCATCTCCCATCCTGCCCCTGAAACCCTCATCATGCATTAATCTCCCATCCTGCCCCTGAAACCCTCATCATGCATTTATCTCCTCCAGAAGGAACCTGCAGGTAAGCATTTGGTTGG
>TU1953281
CTGGTTGAGGTACTTCCCAGCGAAGAAGGTCTGGTAGCCAGCATAGGCCTGCAGTAGAGCAGGGAAGGTCTTGGGCTCCTGGGTCTTCTGCCAGGCCGTGCTGCTGCAGTTCCCCTCCAGAGTGTTGTTGATCACATGGTGGTTATGAGGATACTTTCCTGTTAGGATGCTGGCTCTGCTGGGACAGCACAGTGGGCTGGCTACAAAGCGTTGGTAAAGGTGATCCCTGCTTCACCAATCAGTTT

Function

symbol description
gns Enables sulfuric ester hydrolase activity. Predicted to be involved in keratan sulfate catabolic process. Located in extracellular exosome. Implicated in mucopolysaccharidosis III and mucopolysaccharidosis type IIID.

NR:

description
N-acetylglucosamine-6-sulfatase-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1953280 False 427 lncRNA 0.53 2 9274554 9275056
TU1953281 True 245 lncRNA 0.55 2 9274554 9275993

Neighbor

gene id symbol gene type direction distance location
zgc:194209 LOC106591857 coding upstream 33215 9217225 ~ 9241339 (+)
eps8a LOC106594571 coding upstream 183064 8908286 ~ 9091490 (+)
LOC118942859 NA coding upstream 189996 9082796 ~ 9084558 (+)
LOC118942863 NA coding upstream 247538 9024374 ~ 9027016 (+)
LOC118942858 LOC106612417 coding upstream 405318 8864331 ~ 8869236 (+)
LOC110507941 LOC106592244 coding downstream 60888 9336881 ~ 9354472 (+)
LOC118943004 LOC106591072 coding downstream 111724 9387717 ~ 9391585 (+)
LOC118936575 LOC106592244 coding downstream 126501 9402494 ~ 9413171 (+)
LOC118942866 LOC106576670 coding downstream 256111 9532104 ~ 9722986 (+)
LOC118942867 NA coding downstream 493597 9769444 ~ 9771487 (+)
G1705670 NA non-coding upstream 3664 9270460 ~ 9270890 (+)
G1705669 NA non-coding upstream 4168 9269628 ~ 9270386 (+)
G1705667 LOC106591858 non-coding upstream 10313 9263912 ~ 9264241 (+)
G1705646 NA non-coding upstream 14281 9259996 ~ 9260273 (+)
G1705649 NA non-coding upstream 17027 9256229 ~ 9257527 (+)
G1705645 NA non-coding downstream 23009 9299002 ~ 9333138 (+)
G1705654 NA non-coding downstream 24794 9300787 ~ 9303687 (+)
G1705650 NA non-coding downstream 39604 9315597 ~ 9321774 (+)
G1705728 NA non-coding downstream 193320 9469313 ~ 9471313 (+)
G1705279 NA other upstream 261391 9011926 ~ 9013163 (+)
G1705267 NA other upstream 297989 8975304 ~ 8976565 (+)
G1705229 NA other upstream 423447 8850398 ~ 8851107 (+)
LOC118942994 LOC106591951 other upstream 713342 8538928 ~ 8564807 (+)
G1705918 NA other downstream 379305 9655298 ~ 9655718 (+)
G1705920 NA other downstream 383338 9659331 ~ 9660140 (+)
G1706013 NA other downstream 472192 9748185 ~ 9753473 (+)
G1706090 NA other downstream 639720 9915713 ~ 9918019 (+)
G1706152 NA other downstream 858395 10134388 ~ 10135384 (+)

Expression


Co-expression Network