G1705645


Basic Information

Item Value
gene id G1705645
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 9299002 ~ 9333138 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1953239
ggtaatagagacagtagatctagctggtctgtcataatgtaatagagacagtagatctagctggtctgtcataatgtaatagagacagtagatctagctggtctgtcataatgtaatagagacagtagatctagctggtctgtgataatataatagagacattagatctagctggtctgtcacaatataatagagacagtagatctagcaggtctgtcataatataatagagacagtagatctatctggtcggtcataatataaatgacacagtagatctagctggtctgtcaaaatgtaatagagacagtagatctagctggtctgtcataatgtaacaaagatagtagatctagcaggtctgtcataatataatagagacagtagaaatagctggtctgtcataatacaatagagacatagagacagtagatctagctggtctgtcataatataatagagacagtaggtctagctggtctgacataatataaatagagacagtagatctagctggtctgtcataatgtaatagagacagtagatctaactggtctgtcataatataacaaagacagtagatctagctggtctgtcataatgtaatagagacagtagatctagctggtctgtcatagtacaatagagacagtagatctagctggtctgtcatattataatagtgacactagacatagctggtctgccataatataatagagacagtagatctagcaggtctgtcataatgtaatagagacagtagatctagctggtctgtcatattataatagagacagtagatctagctggtctgtcataatataatagagacagtagaaatagctggtctgtcataatataatagagacagtaggtctagctggtctgacataatataaatagagacagtagatatagctggtaaatcataatataaatgacacagtagatctagctggtctgtcaaaatgtaatagagacagtagatctagctggtctgtcataatataatagagacagtagatctagctggtctgtgataatataatagagacagtagatctaggtgttctgtcataatataatagagacagtagatctagctggtctgtcataatataatagagacagtagatctagctggtctgtgataatataatagagacagtagatctagctgttctgtcataatataatagagacattagacatagctggtctgtcataatataatagagacagtagatctagctggtctgtcataatataatagagac
>TU1953241
ggtaatagagacagtagatctagctggtctgtcataatgtaatagagacagtagatctagctggtctgtcataatgtaatagagacagtagatctagctggtctgtcataatgtaatagagacagtagatctagctggtctgtgataatataatagagacattagatctagctggtctgtcacaatataatagagacagtagatctagcaggtctgtcataatataatagagacagtagatctatctggtcggtcataatataaatgacacagtagatctagctggtctgtcaaaatgtaatagagacagtagatctagctggtctgtcataatgtaacaaagatagtagatctagcaggtctgtcataatataatagagacagtagaaatagctggtctgtcataatacaatagagacatagagacagtagatctagctggtctgtcataatataatagagacagtaggtctagctggtctgacataatataaatagagacagtagatctagctggtctgtcataatgtaatagagacagtagatctaactggtctgtcataatataacaaagacagtagatctagctggtctgtcataatgtaatagagacagtagatctagctggtctgtcatagtacaatagagacagtagatctagctggtctgtcatattataatagtgacactagacatagctggtctgccataatataatagagacagtagatctagcaggtctgtcataatataatagaggcagtagatctagcaggtctgtcattatataatagagacagtagatctatctggtcggtcataatataaatgacacagtagatctagctggtctgtcaaaatgaaatagagacagtagatctagctggtctgtcataatgtaaaaaagacagtagatctagcaggtctgtcataatataatagagacagtagaaatagctggtctgtcataatacaatagagacatagagacagtagatctagctggtctgtcataatataatagagacaatgggtctagctggtctgacataatataaatagagacagtagatctagctggtctgtcataatgtaatagagacagtagatctacctggtctgtcataatgtaatagagacagtagatctagctggtctgtcataatgtaatagagacagtagatctagctggtctgtcataatgtaatagagacagtagatctagctggtctgtcataatataatagagacagtacatctagctggtctgtcataatataatggagacagtagatctagctggtctgtgtcattatataatagagacagtagatctagctggtctgtcataatataaatgagacagtagatctatctggtctgtcataatataatagagacagtatatctagctggtctgtcatattataatagagacagtagatctagctggtctgtcataatataatagagacagtagaaatagc
>TU1953242
ggtaatagagacagtagatctagctggtctgtcataatgtaatagagacagtagatctagctggtctgtcataatgtaatagagacagtagatctagctggtctgtcataatgtaatagagacagtagatctagctggtctgtgataatataatagagacattagatctagctggtctgtcacaatataatagagacagtagatctagcaggtctgtcataatataatagagacagtagatctatctggtcggtcataatataaatgacacagtagatctagctggtctgtcaaaatgtaatagagacagtagatctagctggtctgtcataatgtaacaaagatagtagatctagcaggtctgtcataatataatagagacagtagaaatagctggtctgtcataatacaatagagacatagagacagtagatctagctggtctgtcataatataatagagacagtaggtctagctggtctgacataatataaatagagacagtagatctagctggtctgtcataatgtaatagagacagtagatctaactggtctgtcataatataacaaagacagtagatctagctggtctgtcataatgtaatagagacagtagatctagctggtctgtcatagtacaatagagacagtagatctagctggtctgtcatattataatagtgacactagacatagctggtctgccataatataatagagacagtagatctagcaggtctgtcataatataatagaggcagtagatctagcaggtctgtcattatataatagagacagtagatctatctggtcggtcataatataaatgacacagtagatctagctggtctgtcaaaatgaaatagagacagtagatctagctggtctgtcataatgtaaaaaagacagtagatctagcaggtctgtcataatataatagagacagtagaaatagctggtctgtcataatacaatagagacatagagacagtagatctagctggtctgtcataatataatagagacagtaggtctagctggtctgacataatttaaatagagacagtagatctagctggtctgtcataatgtaatagaggcagtagatctagctggtctgtcataatgtaatagagacagtagatcttacttccggcgccgacagagatggccgcctcgcttcgtgttcctaggaaactatgcagttttttgtt
>TU1953245
ggtaatagagacagtagatctagctggtctgtcataatgtaatagagacagtagatctagctggtctgtcataatgtaatagagacagtagatctagctggtctgtcataatgtaatagagacagtagatctagctggtctgtgataatataatagagacattagatctagctggtctgtcacaatataatagagacagtagatctagcaggtctgtcataatataatagagacagtagatctatctggtcggtcataatataaatgacacagtagatctagctggtctgtcaaaatgtaatagagacagtagatctagctggtctgtcataatgtaacaaagatagtagatctagcaggtctgtcataatataatagagacagtagaaatagctggtctgtcataatacaatagagacatagagacagtagatctagctggtctgtcataatataatagagacagtaggtctagctggtctgacataatataaatagagacagtagatctagctggtctgtcataatgtaatagagacagtagatctaactggtctgtcataatataacaaagacagtagatctagctggtctgtcataatgtaatagagacagtagatctagctggtctgtcatagtacaatagagacagtagatctagctggtctgtcatattataatagtgacactagacatagctggtctgccataatataatagagacagtagatctagctggtctgtcatattataatagtgacactagacatagctggtctgccataatataatagagaaagtagatctagctggtctgtcataatgtaatagagacagtagatctagctggtctgtcataatgtaatagagacagtagatctagctggtctgtcataatgtaatagagacagtagatctagctggtctgtgataatataatagagacattagatctagctggtctgtcacaatataatagagacagtagatctagcaggtctgtcataatataagagagacagtagatctatctggtcggtcataatataaatgacacagtagatctagctggtctgtcaaaatgtaatagagacagtagatctagctggtctgtcataatataatagagacagtagaaatagctggtctgtcataatacaatagagacatagagacagtagatctagctggtctgtcataatataatagagacagtaggtctagctggtctgacataatataaatagagacagtagatctagctggtctgtcataatgtaatagagacagtagatctagctggtctgtcataatataaatgagacagtagatctatctggtctgtcataatataatagagacag
>TU1953246
ggtaatagagacagtagatctagctggtctgtcataatgtaatagagacagtagatctagctggtctgtcataatgtaatagagacagtagatctagctggtctgtcataatgtaatagagacagtagatctagctggtctgtgataatataatagagacattagatctagctggtctgtcacaatataatagagacagtagatctagcaggtctgtcataatataatagagacagtagatctatctggtcggtcataatataaatgacacagtagatctagctggtctgtcaaaatgtaatagagacagtagatctagctggtctgtcataatgtaacaaagatagtagatctagcaggtctgtcataatataatagagacagtagaaatagctggtctgtcataatacaatagagacatagagacagtagatctagctggtctgtcataatataatagagacagtaggtctagctggtctgacataatataaatagagacagtagatctagctggtctgtcataatgtaatagagacagtagatctaactggtctgtcataatataacaaagacagtagatctagctggtctgtcataatgtaatagagacagtagatctagctggtctgtcatagtacaatagagacagtagatctagctggtctgtcatattataatagtgacactagacatagctggtctgccataatataatagagacagtagatctagcaggtctgtcataatgtaatagagacagtagatctagctggtctgtcataatgtaatagagacagtagatctagctggtctgtcataatgtaatagagacagtagatctagctggtctgtcataatgtaatagagacagtagatctagctggtctgtcataatgtaatagagacagtagatctagctggtctgtgataatataatagagacattagatctagctggtctgtcacaatataatagagacagtagatctagcaggtctgtcataatataatagagacagtagatctatctggtcggtcataatataaatgacacagtagatctagctggtctgtcaaaatgtaatagagacagtagatctagctggtctgtcataatgtaacaaagatagtagatctagcaggtctgtcataatataatagagacagtagaaatagctggtctgtcataatacaattgagacatagagacagtagatctagctggtctgtcataatataatagagacagtaggtctagctggtctgacataatataaatagagacagtagatatagctgctaggtcataatataaatgacacagtagatctagctggtctgtaaaaatgtaatagagacagtagatctagctggtctgtcataatgtaacaaagacagtagatctagcaggtctgtcataaaataatagagacagtagatctagcaggtctgtcattatataatagagacagtagat
>TU1953243
ggtaaatcataatataaatgacacagtagatctagctggtctgtcaaaatgtaatagagacagtagatctagctggtctgttataatataatagagacagtagatctagctggtctgtcataatataatagagacagtaggtctagctggtctgacataatataaatagagacagtagatctagctggtctgtcataatgtaatagagacagtagatctacctggtctgtcataatgtaatagagacagtagatctagctggtctgtcataatataatagagacagtagatctagctggtctgtgataatataatagagacagtagatctagctgttctgtcataatataatagagacagtagatctagctggtctgtcataatataatagagacagtagatctagctggtctgtgataatataatagagacagtagatctaggtgttctgtcataatataatagagacattagacatagctggtctgtcataatataatagagacagtagatctagctggtctgtcataatataatagagacagcaggtctagctggtctgacataatataacaaagacagtaggtctaactggtctgtcataatataacaaagacagtagatctagctggtctgtcataatgtaatagagacagtagatctagctggtctgtcatagtacaatagagacagtagatctagctggtctgtcatattataatagtgacactagacatagctggtctgccataatataatagagaaagtagatctagctggtctgtcataatgtaatagagacagtagatctagctggtctgtcataatgtaatagagacagtagatctagctggtctgtcataatgtaatagagacagtagatctagctggtctgtgataatataatagagacattagatctagctggtctgtcacaatataatagagacagtagatctagcaggtctgtcataatataagagagacagtagatctatctggtcggtcataatataaatgacacagtagatctagctggtctgtcaaaatgtaatagagacagtagatctagctggtctgtcataatataatagagacagtagaaatagctggtctgtcataatacaatagagacatagagacagtagatctagctggtctgtcataatataatagagacagtaggtctagctggtctgacataatataaatagagacagtagatctagctggtctgtcataatgtaatagagacagtagatctagctggtctgtcataatataaatgagacagtagatctatctggtctgtcataatataatagagacag
>TU1953247
ggtaaatcataatataaatgacacagtagatctagctggtctgtcaaaatgtaatagagacagtagatctagctggtctgttataatataatagagacagtagatctagctggtctgtcataatataatagagacagtaggtctagctggtctgacataatataaatagagacagtagatctagctggtctgtcataatgtaatagagacagtagatctacctggtctgtcataatgtaatagagacagtagatctagctggtctgtcataatataatagagacagtagatctagctggtctgtgataatataatagagacagtagatctagctgttctgtcataatataatagagacagtagatctagctggtctgtcataatataatagagacagtagatctagctggtctgtgataatataatagagacagtagatctaggtgttctgtcataatataatagagacattagacatagctggtctgtcataatataatagagacagtagatctagctggtctgtcataatataatagagacagcaggtctagctggtctgacataatataacaaagacagtaggtctaactggtctgtcataatataacaaagacagtagatctagctggtctgtcataatgtaatagagacagtagatctagctggtctgtcatagtacaatagagacagtagatctagctggtctgtcatattataatagtgacactagacatagctggtctgccataatataatagagacagtagatctagctggtctgtcataatatagtagagacagtagatctagctggtctgtcataatataatagagacagtaggtctagctggtctgacataatttaaatagagacagtagatctagctggtctgtcataatgtaatagaggcagtagatctagctggtctgtcataatgtaatagagacagtagatcttacttccggcgccgacagagatggccgcctcgcttcgtgttcctaggaaactatgcagttttttgtt
>TU1953249
ggtaaatcataatataaatgacacagtagatctagctggtctgtcaaaatgtaatagagacagtagatctagctggtctgttataatataatagagacagtagatctagctggtctgtcataatataatagagacagtaggtctagctggtctgacataatataaatagagacagtagatctagctggtctgtcataatgtaatagagacagtagatctacctggtctgtcataatgtaatagagacagtagatctagctggtctgtcataatataatagagacagtagatctagctggtctgtgataatataatagagacagtagatctagctgttctgtcataatataatagagacagtagatctagctggtctgtcataatataatagagacagtagatctagctggtctgtgataatataatagagacagtagatctaggtgttctgtcataatataatagagacattagacatagctggtctgtcataatataatagagacagtagatctagctggtctgtcataatataatagagacagcaggtctagctggtctgacataatataacaaagacagtaggtctaactggtctgtcataatataacaaagacagtagatctagctggtctgtcataatgtaatagagacagtagatctagctggtctgtcatagtacaatagagacagtagatctagctggtctgtcatattataatagtgacactagacatagctggtctgccataatataatagagacagtagatctagctggtctgtcataatatagtagagacagtagatctagctggtctgtcataatgtaatagagacagtagatctagctggtctgtcataatataatagagacagtagatctagctggtctgtcataatataatagagacagtagatctagctggtctgtgtcattatataatagagacagtagatctagctggtctgtaatcatataaatgagacagtagatctatctggtctgtcataatataatagagacagtagatctagctggtctgtcatattataatagagacagtagatctagctggtctgtcataatataatagagacagtaggtctagctggtctgtcataatacaattgagacatagagacagtagatctagctggtctgtcataatataatagagacagtaggtctagctggtctgacataatataaatagagacagtacatctagctggtctgtcataatatcatagagacagtagatctagctggtctgtgataatataatagagacagtagctctagctggtctgtcataatataatagagacagtagatctagctggtctgtgtcattatataatagagacagtagatctagctggtctgtcataatgtaatagagacagtagatctagctggtctgtcataatgtaatagagacagtagatctagctggtctgtcataacataatagagacagtacatctagctggtctgtcataatataatagagacagtagatctagctggtctgtcataatataatagagacagtagatctagctggtctgtcataatgtaaatgagacagtagatctagctggtcagtcataatgtaaattagacagtagatctagctggtctgtcattatataatagagacagtagatctagctggtctgtcataatgtaatagagacagtagatctagctggtctgtcataatataatagagacagtagatctagctggtctgtcataatataatagagacagtagatctagctggtctgtcagtagatatagctggtgtgtcataatataatagagacagtagatctagctggtttgtcataatgtaatagagacagtagatctagctggtctgtcataatataatagagagtagatctagctggtctgtcataatataatagagacagtagatctaggtggtctgacataatataatagagacaatagatcttactggtctgtaataatataatagagacagtagatctagctggtctgtcatagtataatagagacagtatatctaatTAATGAtctaatccctgagctgacaaggtacaaatctgtcgttctgcccctgaacaaagcagttaacccactgttactagGCTTAATTGCAaagaataatttgttcttaactgacttgcctagttaaataaaggttaaataaataaagtcaTAGGCTCTGTACTGATAAGTGGCTCTGGCACGGGCTGCTTGGGGCTGGGGGTAAGAGTCCATGGGTTGGGTAGGATATGGCAAATCCGACCACAATGCTATCTttctgcttcctgtttacaagcaaaaactcaaccATGAAGTGCCAGTGACATGCTCAGTACAGAAGTGGTCAAGACGAAGAGGACGCTATGCTACAAGACTGTTTcttacagactgg
>TU1953248
agacagtagatctagctggtctgtcattatataatagagacagtagatctagctggtctgtcataatgtaatagagacagtagatctagctggtctgtcataatataatagagacagtagatctagctggtctgtcataatataatagagacagtagatctagctggtctgtcataatatcatagagacagtagatctagctggtctgtgataatataatagagacagtagctctagctggtctgtcataatataatagagacagtagatctagctggtctgtgtcattatataatagagacagtagatctagcttgtctgtcataatgtaaatgagacagtagatctagctggtcagtcataatgtaaattagacagtagatctagctggtctgtcattatataatagagacagtagatctagctggtctgtcataatgtaatagagacagtagatctagctggtctgtcataatataatagagacagtagatctagctggtctgtcataatataatagagacagtagatctagctggtctgtcagtagatatagctggtgtgtcataatataatagagacagtagatctagctggtttgtcataatgtaatagagacagtagatctagctggtctgtcataatataatagagagtagatctagctggtctgtcataatataatagagacagtagatctaggtggtctgacataatataatagagacaatagatcttactggtctgtaataatataatagagacagtagatctagctggtctgtcatagtataatagagacagtatatctaatTAATGAtctaatccctgagctgacaaggtacaaatctgtcgttctgcccctgaacaaagcagttaacccactgttactagGCTTAATTGCAaagaataatttgttcttaactgacttgcctagttaaataaaggttaaataaataaagtcaTAGGCTCTGTACTGATAAGTGGCTCTGGCACGGGCTGCTTGGGGCTGGGGGTAAGAGTCCATGGGTTGGGTAGGATATGGCAAATCCGACCACAATGCTATCTttctgcttcctgtttacaagcaaaaactcaaccATGAAGTGCCAGTGACATGCTCAGTACAGAAGTGGTCAAGACGAAGAGGACGCTATGCTACAAGACTGTTTcttacagactgg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1953239 False 1280 lncRNA 0.36 2 9299002 9319825
TU1953241 False 1487 lncRNA 0.36 2 9299002 9325462
TU1953242 False 1216 lncRNA 0.37 2 9299002 9326396
TU1953245 False 1364 lncRNA 0.36 2 9299002 9315015
TU1953246 False 1480 lncRNA 0.36 2 9299002 9309775
TU1953243 False 1331 lncRNA 0.36 3 9303748 9315015
TU1953247 False 1027 lncRNA 0.37 5 9303748 9326396
TU1953249 False 2437 lncRNA 0.37 6 9303748 9333138
TU1953248 True 1184 lncRNA 0.38 2 9331051 9333138

Neighbor

gene id symbol gene type direction distance location
zgc:194209 LOC106591857 coding upstream 57663 9217225 ~ 9241339 (+)
eps8a LOC106594571 coding upstream 207512 8908286 ~ 9091490 (+)
LOC118942859 NA coding upstream 214444 9082796 ~ 9084558 (+)
LOC118942863 NA coding upstream 271986 9024374 ~ 9027016 (+)
LOC118942858 LOC106612417 coding upstream 429766 8864331 ~ 8869236 (+)
LOC110507941 LOC106592244 coding downstream 3743 9336881 ~ 9354472 (+)
LOC118943004 LOC106591072 coding downstream 54579 9387717 ~ 9391585 (+)
LOC118936575 LOC106592244 coding downstream 69356 9402494 ~ 9413171 (+)
LOC118942866 LOC106576670 coding downstream 198966 9532104 ~ 9722986 (+)
LOC118942867 NA coding downstream 436452 9769444 ~ 9771487 (+)
G1705671 gns non-coding upstream 23009 9274554 ~ 9275993 (+)
G1705670 NA non-coding upstream 28112 9270460 ~ 9270890 (+)
G1705669 NA non-coding upstream 28616 9269628 ~ 9270386 (+)
G1705667 LOC106591858 non-coding upstream 34761 9263912 ~ 9264241 (+)
G1705646 NA non-coding upstream 38729 9259996 ~ 9260273 (+)
G1705728 NA non-coding downstream 136175 9469313 ~ 9471313 (+)
G1705863 NA non-coding downstream 188921 9522059 ~ 9529433 (+)
G1705879 NA non-coding downstream 203663 9536801 ~ 9537651 (+)
G1705880 NA non-coding downstream 206111 9539249 ~ 9539450 (+)
G1705279 NA other upstream 285839 9011926 ~ 9013163 (+)
G1705267 NA other upstream 322437 8975304 ~ 8976565 (+)
G1705229 NA other upstream 447895 8850398 ~ 8851107 (+)
LOC118942994 LOC106591951 other upstream 737790 8538928 ~ 8564807 (+)
G1705918 NA other downstream 322160 9655298 ~ 9655718 (+)
G1705920 NA other downstream 326193 9659331 ~ 9660140 (+)
G1706013 NA other downstream 415047 9748185 ~ 9753473 (+)
G1706090 NA other downstream 582575 9915713 ~ 9918019 (+)
G1706152 NA other downstream 801250 10134388 ~ 10135384 (+)

Expression


Co-expression Network