G1705999 (tmem178b)


Basic Information

Item Value
gene id G1705999
gene name tmem178b
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 9719108 ~ 9724010 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1953693
gatagccaggggctctgACACTTTACACACAATACATGTGTTGttggtgagtcctccagatcagaggcaggggaTAGCCAGGGGCTCTGACACTTTACACACAATACATGTGTTGttggtgagtcctccagatcagaggcaggggaTAGCCAGGGGCTCTGACACTTTACACACAATGCATGTGTGGttggtgagtcctccagatcagaggcagtagagacgACCAGGGGCACGCTCTGACACTTTACAAACAATGCATTTGTGgttgtcctccagatcagaggcagtagggatggaccagggatgttctcttgataagtacttttaggtgtcagggaaaatgtatggagtaaaaagcacattattgtctttaggaatgtagtgaagtcaaAGTTATAaacaatataaatagtaaagtacagatacccccccccccccaaaaaaaagactTAAGAAgtatttaaaattattttttacttaagtactttacaccactgggatTGGGCATTTCTTTACATTTAACGTTTTCTGTAATTGTTTATGAATAACATTGTCATTAACATTAACACTTCATGATCAAAAGTGATATGATGTTGTGACAAACCTTTTACAGAAAGAGAATGGCTGAGATTCCCAGCCTGTGATAGGCTGAGCCTTTGTCCTCCATCTTTAGAAGCTTGTGGTTTTACCTGAAGCTGTGCCACCTCTCCTCACGACATCTTTCACCGGTTGTCCTCTAGCTCTAAATATAATCTGCTCCGTAGTAAAACCCCCAAGGCAGAGAGCAACAATACAATTTTGAAAGTCTTTGTCCTCCCAAACAGATGACAGGACAGAACCAGGGGTAATATTGTCCTCCCAAACAGATGACAGGACAGAACCAGGGTAATATTGTCCTCCCAAACAGATGACAGGACAGAACCAGGGGTAATATTGTCCTCCCAAACAGATGACAGGACAGAACCAGGGTAATATTGTTTAAACAGGTGACAGAACAGAACCAGGGTAATATTGTCCTCCCAAACAACAGATGACAGGACAGAACCAGGGTAATATTGTTTAAAGTACTAGTACAACACACAGTTCCTTCATTCAGGATGGGTTTCAGTACAACACACAGTTCCTTCATTCAGGATGGGTTTCAGGACGATACAAAGAGAGTGAATGAATGTATAAAATGTTAGATGACTGAGGATAGACGGGGCTTGAAGAAATAGGTATGTGTCTCCattggcatcctattccctgtccagtgcactactgttgactagggaccagaggggaaagggagccatttgggacgatTGGCAACCTATTTCCCTATCCAGTgtactgtactactgttgactagggaccagagggaaaagggggccatttgggatgcaaactagtATGCCCCCGGTGGGCATGACAATGCTCCAACATGGCATTTCCTGGCTGTAATTTCTCTGGAATGATGATTCGGTAGTTTTGTACAACAGTAGAGATACTCTAGAGAGCCTGTATCGTGTGATGTGCCATTCTTCTCCCACAGCTAGTCCAATGACCCAGAGTAGATCTGAGGAACACACAGCTAGTCCAATGACCCAGAGTAGATCTGAGGAACACACAGCTAGTCCAATGACCCAGAGTAGATCTGAGGAACACACAGCTAGTCCAATGACCCAGAGTAGATCTGAGGAACACACAGCTAGCCCAATGACCCAGAGTAGATCTGAGGAACACACAGCTAGCCCAATGACCCAGAGTAGATCTGAGGAACACACAGCTAGTCCCAATGACCCAGAGTAGATCTGAGGAACACACAGCTAGTCCAATGACCCAGAGTAGATCTGAGGAACACACAGCTAGTCCAATCGGAAGTCTCCAACAAGCTGAGGTGTCTCTTTAGAACAGGATGTGCTGTTTATAATACTCCAACCTTTGACCCCTTTCAGTTAGTGTTGATTTAACCCTCTTcgacacaggaggttggtggcacctcaattggggaggacgggctcgtggtaaatGGCTTGAGAGgaaataggtggaatggtatcaaacacatggtctcCATGTGTTTGAATGgtttggtttccatggtttcaatGTGTTTGAATGgtttggtttccatggtttcaatGTGTTTGAATGgtttggtttccatggtttcaatGTGTTTGAATGGTTTGGTTTCCATGGTCTCCATGTGTTTGAATGgcttggtttccatgtgtttgaatggtttggtttccatggtttccatgtgtttgaatGGTTTGGTTTCCATGGTTtccacgtgtttgataccgttccatttgcGCCGTTCAAGCCATTatgatgagccgtcctcccctcagcaacaACAGAGTTTCAGTTATTCTCCTTGTTGTGGAGGCTGGTCACCATGATGAGTTAGTTCCTCTGAGGTTCAGGCTGTTGTTCTTGTCACTCCCATCCCTTGTTGTCTGTCATCGCCTGTCATCGTTCATTACTGAAAGGTTCCTCTCGTTCCCCCCAGTAGAGAAGGCCGTTTCATGGTACATCCATTTCAAGCATCACAACATCCCCGACTACAACCCCCCCCCAGCACAACTTCAGATCGATGACTAGATTTTTCTGTCAGttcgtgtaaaaaaaaaaaatcaattgttTTTCAAGAAACCAGATCatgtttatacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacactttaaacaaagaaaaaacaaaacattgtCTTTAAGTGGAAAATGATTAATTAAATGAATGCATTGATTTGTCAACTCAttgttacatttttgtttgttaaaTTCTCTTTTGTTACGGCTGTCCTGTGTGGTTAAAGGTGTAGTCAGCTATCTATCTAGGAACTGGacctccagtccctctatcctccatcccaGTCCCTCTAGCAGACCGTCCCGTTCTCCTGCCTCGACTTGGGGCAGGTGGATCGAGGGATGGGCTGGACGGAGGGAGCCAGGGTACAGAAGAAACCAGCGATGAGGGTGAGCCCCAGACCTCCCCAGGCGCAGAACATAGACCAGCCGTAGCCGTGGCCGATGTCGTCCGGCAGGCCGTACAGATAGCGAGGATAACGGGACAGCTCGAAGTTGATCCCCGCCACGCAGGTACAGAGAGAGATTATACAGAAGGTgcctggggaggagagagggggaggtggggagagggtaAGAGGGGAGGTgtcgagggagagagtgggggaagataaaggagaggggaggggtggagagaggggaggttggGGAAAGGAACGAGTGAGAAGGtggggatagatagatagagagaagaggtagagagagaag

Function

symbol description
tmem178b Predicted to be integral component of membrane. Predicted to be active in membrane.

NR:

description
PREDICTED: transmembrane protein 178B

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1953693 True 3378 lncRNA 0.46 6 9719108 9724010

Neighbor

gene id symbol gene type direction distance location
LOC110507938 LOC106591072 coding downstream 210648 9487581 ~ 9508460 (-)
LOC110515809 LOC106592244 coding downstream 238592 9464081 ~ 9480516 (-)
LOC118936574 LOC106592244 coding downstream 339233 9371753 ~ 9379875 (-)
LOC118942865 LOC106593190 coding downstream 441960 9261999 ~ 9277148 (-)
LOC110512574 LOC107758139 coding downstream 514432 9111713 ~ 9204676 (-)
LOC110510472 LOC108426397 coding upstream 18828 9742838 ~ 9791396 (-)
LOC110490693 il17r coding upstream 151665 9875675 ~ 9893829 (-)
LOC118936576 LOC106609822 coding upstream 187072 9911082 ~ 9926166 (-)
LOC118942869 arhgef39 coding upstream 232895 9956905 ~ 10061152 (-)
LOC118942871 NA coding upstream 404060 10128070 ~ 10129253 (-)
G1705995 NA non-coding downstream 7223 9707909 ~ 9711885 (-)
G1705981 NA non-coding downstream 49503 9665667 ~ 9669605 (-)
G1705978 NA non-coding downstream 63390 9655360 ~ 9655718 (-)
G1705976 NA non-coding downstream 74527 9644013 ~ 9644581 (-)
G1705974 NA non-coding downstream 77725 9641033 ~ 9641383 (-)
G1706002 NA non-coding upstream 4105 9728115 ~ 9729253 (-)
G1706742 NA non-coding upstream 16657 9740667 ~ 9741158 (-)
G1706763 NA non-coding upstream 57221 9781231 ~ 9781621 (-)
G1706784 NA non-coding upstream 97695 9821705 ~ 9822536 (-)
G1706781 NA non-coding upstream 100581 9824591 ~ 9859094 (-)
G1705975 NA other downstream 76167 9641950 ~ 9642941 (-)
LOC118942864 NA other downstream 615953 9100061 ~ 9104616 (-)
LOC118942856 crbl2 other downstream 910184 8805889 ~ 8808961 (-)
G1706990 NA other upstream 636414 10360424 ~ 10360975 (-)
G1706993 NA other upstream 643874 10367884 ~ 10368439 (-)
G1707057 NA other upstream 806607 10530617 ~ 10531271 (-)
LOC110499727 LOC106609821 other upstream 1096914 10796557 ~ 10897355 (-)
LOC110518048 LOC106576476 other upstream 1240825 10903853 ~ 11086469 (-)

Expression


Co-expression Network