G1706009


Basic Information

Item Value
gene id G1706009
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 9741898 ~ 9743489 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1953725
GGATCAAAGGAAGTTCCAAAGAGGAAGTGTGACGAAGCCCGAGATTTGATCTGCGAATCAGAAGCGTACGTCTCGGGGTCTGGCGGGAAGCTGCGTATAAACAAAACGGGAGGTGAGGGACGCACCCAAAACCCATGTAGACCAccgctttagaccagagccccatggggtCCTAGGAAGTAGTGAACTATACAGGTAACAGGGGTCCCCCGTTTGAGATAGATCTGATTCGTAGCTTCGAAGTGACTCGTTTCATTTCAGTCAACCAAACAACTCACGACTGTCGCATCCATCCTTTCAAACATGGTTTTATTTCCCCCTACGTTCAGTTATATTTGTGATAAAACACAATATTTTAATATCTGGATCATTCGCCAATATCTCGGTTTTGACAACTTCAAATGCTCCTCTTTAGCTCGCCGTCAAATCCCGATGGTGCCGTCCCTAATGCTGCCATAGCAACCTGGGAACATCTGGTAACTTATCGGTCACGATGTGgttggacagacagagacaggtagacagacagacagacagagacagacacaaacagacagacagagagacagagccaggtagacagacagagagagacaggtagacagacagagacagagacaggtagacagagacagacagggccaggtagacagagacagacagggccaggtagacagacagagacagacagggccaggtagacagacagagacagacatggcCAGGTAGACAGggccaggtagacagacagagacagacagggccagGTAGACAGGGCCAggtagacagatagagacagacagggccaggtagacagacagagacagacagggccagGTAGACAGGGCCAGGTAGACAGGGCCAGGTAGACAGGGCCAGGTAGACAGGGCCAGGTAGACAGggccaggtagacagacagacacagagagacagagacagagagacagagagacagacagacacagagagacagagacagagagacagacagagaccgacagggccaggtagacagacagacagtgtagcaggATAGTAGTTTGCCTCTATAGACCAACTGAAACAACCCAACCAAGATGGAACACAGGATCATAAAGCCAGCTCACCAGGAAGAACAACATCtcttaatgttttttttgtttgttaattaCATCCGATTTAGTTTAATGTATGTTTCTGTGGGGGATTTAAAGACGGGAATCAGAAGTCCACTTCACAGCATCGCCCCCTAGTGGCGGTCCATGCCGGCGCTCTGTAGCAGCTCTGTGGGTGTCTGAGCCGGGGATCTGAAAGCAGTCTGGAAGCCTGGAGGTGGGGAGTGGAAGTGGCCGACTGGGTGGGGGTTGTGAGAGGCTGTGGATGGGGGTGGGAAGGGGGCCCAGCTGGGTCTGTGGTGAGGACGGACATGGCCGCTGTGAGAGTTGGGCTGCTGGGGGTTCGGGTTCACAGTGGAGCTGGGGATAGACGGAGCATCCATCTCTGTAAGGGCCTGAAGGGACTTGAGCCAGTGGGGAGGGTTGTCATCCTGGGAGTCAAAACTGTTGCCTGCTGACGATGGGAaa
>TU1953728
CCTACGTTCAGTTATATTTGTGATAAAACACAATATTTTAATATCTGGATCATTCGCCAATATCTCGGTTTTGACAACTTCAAATGCTCCTCTTTAGCTCGCCGTCAAATCCCGATGGTGCCGTCCCTAATGCTGCCATAGCAACCTGGGAACATCTGGTAACTTATCGGTCACGATGTGgttggacagacagagacaggtagacagacagacagacagagacagacacaaacagacagacagagagacagagccaggtagacagacagagagagacaggtagacagacagagacagagacagagacaggtagacagagacagacagggccaggtagacagagacagacagggccaggtagacagacagagacagacagggccaggtagacagacagagacagacatggcCAGGTAGACAGggccaggtagacagacagagacagacagggccagGTAGACAGGGCCAggtagacagatagagacagacagggccaggtagacagacagagacagacagggccagGTAGACAGGGCCAGGTAGACAGGGCCAGGTAGACAGggccaggtagacagacagacacagagagacagagacagagagacagagagacagacagacacagagagacagagacagagagacagacagagaccgacagggccaggtagacagacagacagtgtagcaggATAGTAGTTTGCCTCTATAGACCAACTGAAACAACCCAACCAAGATGGAACACAGGATCATAAAGCCAGCTCACCAGGAAGAACAACATCtcttaatgttttttttgtttgttaattaCATCCGATTTAGTTTAATGTATGTTTCTGTGGGGGATTTAAAGACGGGAATCAGAAGTCCACTTCACAGCATCGCCCCCTAGTGGCGGTCCATGCCGGCGCTCTGTAGCAGCTCTGTGGGTGTCTGAGCCGGGGATCTGAAAGCAGTCTGGAAGCCTGGAGGTGGGGAGTGGAAGTGGCCGACTGGGTGGGGGTTGTGAGAGGCTGTGGATGGGGGTGGGAAGGGGGCCCAGCTGGGTCTGTGGTGAGGACGGACATGGCCGCTGTGAGAGTTGGGCTGCTGGGGGTTCGGGTTCACAGTGGAGCTGGGGATAGACGGAGCATCCATCTCTGTAAGGGCCTGAAGGGACTTGAGCCAGTGGGGAGGGTTGTCATCCTGGGAGTCAAAACTGTTGCCTGCTGACGATGGGAaa

Function

NR:

description
LOW QUALITY PROTEIN: CCR4-NOT transcription complex subunit 4-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1953725 False 1562 lncRNA 0.52 2 9741898 9743489
TU1953728 True 1222 lncRNA 0.53 3 9742216 9743489

Neighbor

gene id symbol gene type direction distance location
LOC118942866 LOC106576670 coding upstream 18912 9532104 ~ 9722986 (+)
LOC118936575 LOC106592244 coding upstream 328727 9402494 ~ 9413171 (+)
LOC118943004 LOC106591072 coding upstream 350856 9387717 ~ 9391585 (+)
LOC110507941 LOC106592244 coding upstream 387426 9336881 ~ 9354472 (+)
zgc:194209 LOC106591857 coding upstream 500559 9217225 ~ 9241339 (+)
LOC118942867 NA coding downstream 26101 9769444 ~ 9771487 (+)
LOC118942868 mkrn1 coding downstream 81361 9824762 ~ 9864743 (+)
LOC110516560 LOC106576660 coding downstream 124913 9868402 ~ 9870589 (+)
LOC118942870 NA coding downstream 237306 9980795 ~ 9981137 (+)
LOC118942996 NA coding downstream 326987 10070476 ~ 10098024 (+)
G1705922 NA non-coding upstream 76560 9665059 ~ 9665338 (+)
G1705921 NA non-coding upstream 81109 9660511 ~ 9660789 (+)
G1705919 NA non-coding upstream 82727 9658892 ~ 9659171 (+)
G1705917 NA non-coding upstream 87286 9654375 ~ 9654612 (+)
G1705913 NA non-coding upstream 102605 9638689 ~ 9639293 (+)
G1706010 NA non-coding downstream 1186 9744675 ~ 9746142 (+)
G1706027 NA non-coding downstream 32261 9775750 ~ 9776626 (+)
G1706031 NA non-coding downstream 40834 9784323 ~ 9800209 (+)
G1706051 NA non-coding downstream 71719 9815208 ~ 9816642 (+)
G1705920 NA other upstream 81758 9659331 ~ 9660140 (+)
G1705918 NA other upstream 86180 9655298 ~ 9655718 (+)
eps8a LOC106594571 other upstream 650493 8908286 ~ 9091490 (+)
G1706013 NA other downstream 4696 9748185 ~ 9753473 (+)
G1706090 NA other downstream 172224 9915713 ~ 9918019 (+)
G1706152 NA other downstream 390899 10134388 ~ 10135384 (+)
LOC110531908 LOC106594049 other downstream 1365939 11103180 ~ 11138813 (+)
G1706652 NA other downstream 1527240 11270729 ~ 11272473 (+)

Expression


Co-expression Network